Gene Avi_4266 details

Gene Information

• Locus tag: Avi_4266
• Symbol: tbpA
• ID: 7386514
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3584780
• End bp: 3585781
• Gene Length: 1002 bp
• Protein Length: 333 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643652929
• Product: thiamine transporter substrate binding subunit
• Protein accession: YP_002551101
• Protein GI: 222150144
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG4143] ABC-type thiamine transport system, periplasmic component
• TIGRFAM ID: [TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily; [TIGR01276] thiamine ABC transporter, periplasmic binding protein

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCCGTT TGTTGCTAGC AGCCCTTCCC CTTCTTGCCA GCCTGACGGT CGCCCAGGCC 
GAAGACAAGG TGTTGACCAT TTACACCTAT GAAAGCTTCG TCTCTGAATG GGGGCCGGGG 
CCGAAGGTGA AAGCCACGTT TGAAAAGACC TGCGGCTGCA CCGTCAAGTT CGTCGGGCTG 
GAAGATGGCG TGGCACTGCT GAACCGCCTG AAGCTGGAAG GCGCTTCCAG CGAGGCGGAT 
CTGGCGCTGG GGCTGGACAC CAATCTCACC GAGGAAGCCA GGCAGACCGG GCTTTTTGCG 
CCCCACGGCA TCGATGCGTC GACGGCCCAG GTGCCTGGCG GCTTCAAGGA CGATATGTTC 
GTGCCCTATG ATTACGGACA TTTCGCCGTC GTCTATGACA CCCAAACCAT AAAAAATCCG 
CCCAAAAGCC TGAAGGAACT GGTGGAGGGA GACCCCGCCC AGAAGATCGT CATCGAGGAC 
CCACGCACTT CGACGCCGGG GCTTGGCCTG CTGCTCTGGG TTAAATCCGT CTATGGCAAG 
GACGCGCCCG CCGCCTGGGC AAAATTGAAA GACCGGGTGC TGACCGTAAC TCCCGGCTGG 
TCGGAAGCCT ATGGCCTGTT CACCAAGGGC GAAGTGCCGA TGGTGTTTTC CTATACGACC 
TCACCCGCCT ATCACATGGT CTCTGAGAAC ACCGAGCGCT ATCAAGCCGC TTTCTTTTCG 
GAAGGGCATT ACATCCAGAT TGAAGTGGCA GGAGTGTTGA AAGGCACCAA GCACAAGCAG 
TTGGCCGAGG ATTTCCTGAA ATTCATGCTG ACGTCCGGCT TCCAGGATGA TATCCCGACC 
AACAATTGGA TGATGCCAGT CACCAAGACC TCGACCCCGC TGCCAGAGGC TTTCGACCGT 
CTGGTCAAGC CAGCCAAGAC CTTCCTGATG AGCCCGCAGG AGGTTGCCGC CAACCGCAAG 
GCCTGGATCG CGGAATGGCA GGCGGCAATG GCGGCTAAGT AA 

 

Protein sequence

MRRLLLAALP LLASLTVAQA EDKVLTIYTY ESFVSEWGPG PKVKATFEKT CGCTVKFVGL 
EDGVALLNRL KLEGASSEAD LALGLDTNLT EEARQTGLFA PHGIDASTAQ VPGGFKDDMF 
VPYDYGHFAV VYDTQTIKNP PKSLKELVEG DPAQKIVIED PRTSTPGLGL LLWVKSVYGK 
DAPAAWAKLK DRVLTVTPGW SEAYGLFTKG EVPMVFSYTT SPAYHMVSEN TERYQAAFFS 
EGHYIQIEVA GVLKGTKHKQ LAEDFLKFML TSGFQDDIPT NNWMMPVTKT STPLPEAFDR 
LVKPAKTFLM SPQEVAANRK AWIAEWQAAM AAK