| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4245 |
|---|
| Symbol | trx |
|---|
| ID | 7386499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3568078 |
|---|
| End bp | 3569082 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643652913 |
|---|
| Product | thioredoxin |
|---|
| Protein accession | YP_002551086 |
|---|
| Protein GI | 222150129 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3118] Thioredoxin domain-containing protein |
|---|
| TIGRFAM ID | [TIGR01068] thioredoxin |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.902531 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGATGA GCAATTCTGG TAATCCATAT GGCGGCTCCT ATGGCGGGCA GATGACGGCC
AATGCGCAAT TTGGCGCAGC ACCTGCTGCG GCAGCGCCAG CGTCTGCAGG AGCATCGCCC
GCCGGTGGTC TGATCAAGGA TACGACGACC CAGGGCTTTG CCAAGGATGT GCTGGAAGAA
TCCCGCCGCC AGCCCGTCCT GGTGGATTTC TGGGCGCCCT GGTGTGGCCC TTGCCGCCAG
TTGACGCCGA TCATCGAAAA GGCGGTCAAT GAGGCCAAGG GCAAGGTCAA GCTGGTCAAG
ATGAATATCG ACGAGCATCC GGCCATTGCC GGCCAGCTTG GCATCCAGTC CATTCCTGCC
GTCGTCGCCT TTGTCGATGG CCGTCCTGCC GATGGCTTCA TGGGCGCGCT GCCGGAAAGT
CAGGTCAAGC AGTTCATCGA CAAGCTCGGT GGCCCGGACG GCGGTGCCGA TCAGGCAGCG
GAAATCGAGG CTGTGCTGGT AGAAGCCAAG GGGCTTTACG ACGACGGCGA TTTCGACGGC
GCTGCCCAGC TCTATGCGGC CGTCATGCAG GCCGATCCGG AAAATGCCAA GGCGGTTGCT
GGTATTGCCG AATGCATGCT GGCCCTCAAC CAGCATGAAC GGGTGCGCCA GATTGTCGAT
GGCCTGCCCG AAGAGCTGGC GAAAGCCCCG GAAATCCAGG CCGTGGCGAA AAAGCTGGAG
CAAATCGAGG AGGCTCGCAA GCTGGGCGAT CCGGTGGCGC TGGAGCAGCA ACTGTCGCTT
AACCCTGACG ATCACGAGGC GCGGCTGAAA CTCGCCAAGA TCCGCAATGT AGAGGGCAAG
CGTGAAGACG CAGCCGATCA TCTGCTGTTG ATTATGAAAA AAGACCGGAC CTTCGACGAT
GATGGTGCGC GTCGCCAACT GGTTGAATTT TTCGAGGTCT GGGGTCCGAA GGACCCCGCC
ACCATTCAGG CTCGGCGCAA GCTGTCTTCG ATCCTGTTTT CGTAA
|
|---|
| Protein sequence | MVMSNSGNPY GGSYGGQMTA NAQFGAAPAA AAPASAGASP AGGLIKDTTT QGFAKDVLEE
SRRQPVLVDF WAPWCGPCRQ LTPIIEKAVN EAKGKVKLVK MNIDEHPAIA GQLGIQSIPA
VVAFVDGRPA DGFMGALPES QVKQFIDKLG GPDGGADQAA EIEAVLVEAK GLYDDGDFDG
AAQLYAAVMQ ADPENAKAVA GIAECMLALN QHERVRQIVD GLPEELAKAP EIQAVAKKLE
QIEEARKLGD PVALEQQLSL NPDDHEARLK LAKIRNVEGK REDAADHLLL IMKKDRTFDD
DGARRQLVEF FEVWGPKDPA TIQARRKLSS ILFS
|
|---|
| |