| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4222 |
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| Symbol | |
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| ID | 7386979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3550480 |
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| End bp | 3552264 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643652897 |
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| Product | glycosyltransferase TPR domain-containing protein |
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| Protein accession | YP_002551070 |
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| Protein GI | 222150113 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGAAAA CTAGCTGCCC CTTTGCAGTC CGATGCTGCA AGCCTGAACG AAAGACAAGC
CCTGCGCCAG ACCAACGGTA TATCGCCGAG CGATCAACAG GAGTGACAGC AGACGCAATG
TCCGACAATC TTGCCGCAGC ATTGGCGCTT TACGCCTCCG GAAACCTGCC GGACGCTTAT
ACCGCGTTGA AAAGCACTCT GGCCAAAAGC CCGGCTCCGG GGCCGAAAGC CTTGCTGGTC
ATGGCGCAGT GCTGTGCCAA GCTCGACCAT TTCACCGAAG CCGCCGTCTT TTACCGGCAG
GCCGCAAAGA TCTTGCCTGA TCAAGCTCTC ACCCTGATCA CACTCGCAGA AAAAATGGAG
CGGTCCGGGA TTGAAAAGGC AAGTGCGCTG GAAATCCAGA CCCTCGAAAC ATCCAGACGG
GCCATTCGCT CCGGTCCGTT TGATGTCCAA TCCTGGAAAA CCTATCGGAC GGCTTTGAGG
CACACGCTCA ATATCGACGA AATGCGCATG AGCGACCAGG CGGTTCGGGA CCGGTTGAAC
CGGCAGGAGG AGAACTATTA TTCGGTCGAT AGCCAAACCG TGCATCTGAG CTGGTGCGAT
GACGAGACTT TGAACAGCCG CTGGAACAAT GACTTGCCAG CTCCTATCTC GGCTTCGCAA
GAGTGGAAAA AACCGGCTGG CGAGACACTC AAACTCGCCT ATCTGCTTGC CGATGGGCCA
AGCGACGACC CACTTCGCAG GCTTACCCTG TCGCTTGCCG CCCGACACAA CCCGACCGAT
TTCGACGTTC TGCTGATTTG CAACGAGCCG CCGGGACCGG ACGAATTGAA TGCAGAGATG
ACGGCTCTCA GCCTCAAGGA TCTCTGTGAG GATACGGCCG TGGCCGCTCT GCGCGCCGCT
GACATCGATA TCCTGATCGA TCCGCTTGGC CATGGCGACG GTGGCCGCCC TGATCTGCTG
CGGCACCGGA TCGCGCCGCT GCATCTGGCA ATGGCCGGTC ACCCGGGGGC AAGGACCGGG
CTTATATGCG ACTATATGCT CGCAAACACC GCAGTTCTGC CGAAGGACGA CCTCCGCCTC
CATGGCCGGG CGATCTGCCA TCTGCCGGAG ACTTTTCTCG TCAGTTCTCC CATGCAACAG
CCGCCTTCGC TGTCGCGCCA GCAGTTCGAC CTGCCTGAAG ACGGAGTGGT CTTCGCGGCT
TTTCATCCCA CCGAACAGAT ATCTCCACGA ACCGCCGATC TCTGGGTCAA TATTCTGCGG
CAGACGGAAA ATAGCCTGCT ATGGATATCC TGCGGCAATT ACGCCCGAAA CAATTTCAGC
ACCTGGATGA ACCGTCAGGG CATAGCCGAA AACCGATTGG TTTTTCGCAA CCCCGCCAGG
CCCATGGAGC AAGTTGGCTG GATGACCCTC GCCGACATCG CCCTCGATTC TTTCCCTTAT
AACGACGGAT TTTCGACGCT TGCCGCCTTG CAGGCCGGTT TACCCGTGCC AACTTTTTCG
GGCGGAAATT TCGCCAGTCG TGTCACGGCA AGCCTATTGC AGGCTTGTGG GCTAGAAAAG
CTGATTGCCC GAGACGCCGA TGCCTATGTG GCTCTGTGTA TCGATCTGGC CCGCGATAAG
AGCGCCCGCA ACGCCTTGAA ACAGACTATT CGCGCACAGG GTCCAAGATC GCCTCTGTTT
GATATCACAG GCTTTATCCG CCACTTGGAA GCCGCCTATC ACACCATGGC AGCGCGGGCC
GCAACGGGCC TTGAGCCGCA GGATTTTTCA GTTCCAGTCC TCTAA
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| Protein sequence | MQKTSCPFAV RCCKPERKTS PAPDQRYIAE RSTGVTADAM SDNLAAALAL YASGNLPDAY
TALKSTLAKS PAPGPKALLV MAQCCAKLDH FTEAAVFYRQ AAKILPDQAL TLITLAEKME
RSGIEKASAL EIQTLETSRR AIRSGPFDVQ SWKTYRTALR HTLNIDEMRM SDQAVRDRLN
RQEENYYSVD SQTVHLSWCD DETLNSRWNN DLPAPISASQ EWKKPAGETL KLAYLLADGP
SDDPLRRLTL SLAARHNPTD FDVLLICNEP PGPDELNAEM TALSLKDLCE DTAVAALRAA
DIDILIDPLG HGDGGRPDLL RHRIAPLHLA MAGHPGARTG LICDYMLANT AVLPKDDLRL
HGRAICHLPE TFLVSSPMQQ PPSLSRQQFD LPEDGVVFAA FHPTEQISPR TADLWVNILR
QTENSLLWIS CGNYARNNFS TWMNRQGIAE NRLVFRNPAR PMEQVGWMTL ADIALDSFPY
NDGFSTLAAL QAGLPVPTFS GGNFASRVTA SLLQACGLEK LIARDADAYV ALCIDLARDK
SARNALKQTI RAQGPRSPLF DITGFIRHLE AAYHTMAARA ATGLEPQDFS VPVL
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