| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4178 |
|---|
| Symbol | |
|---|
| ID | 7386946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3518182 |
|---|
| End bp | 3518949 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643652864 |
|---|
| Product | esterase |
|---|
| Protein accession | YP_002551037 |
|---|
| Protein GI | 222150080 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2755] Lysophospholipase L1 and related esterases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0335834 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTTTA AACCTGTCCC CCTTCAATTC GCCGTCATAG TGGTGGCTAG CCTGCTCGCA
GGCGGTAGTT TTGCCCTGCC GAGCGTCGCT CAGGAACAGG CTCCGCAAGG CCAGCCAGCG
GAACAGTCCA TGCCTGATCA GCCTCCCGCG GACCAGTCCA TGCCGGAGGA TGCAACGGGG
GATACGCCGG TGGCGGAAGC GCAAGTGCAA TTGATCGGGC TTGGTGACAG CCTGATGGCC
GGCTATCAGC TTCAGGGCGA CGAGGCCTTG ACGAGCCAGC TGGAAAAAGC CCTGCATGAC
AAGGGCATGA ATGTCAGTAT CGGCAATGCA GGCGTGTCCG GCGATACCAC GGAAGGCGGG
CTGGCGCGGG TTGACTGGTC GGTGCCGGAT GGAACGCAGG GCGTTATCCT GGAACTTGGC
GCCAACGATG CGCTGCGCGG TATTGCGCCG GAAGAGAGTG AAAAAAACCT GGCGGCGATC
ATCGAAAAAT TGCAGGCCCG CAAGATTGGC GTGCTGCTGG TGGGGATGAT TGCGCCGCCC
AATATGGGGG CGGATTATGC CAAGAGGTTT AATCCGATCT ATCAGCGTCT GGCTGAAAAA
TATAAAATTC CGCTTTATCC CTTTATCCTT GAGGGCGTCG TGACTGATGC CACGTTGAAA
CTGGGCGATG GCATGCATCC CAACGCCAAG GGCGTGGGGG TGATGGTCGA GCATATGCTG
CCCGCCGTCC AGAGTTTCGC GAAAGGTTTG GAGGATAAGG TGAATTAA
|
|---|
| Protein sequence | MGFKPVPLQF AVIVVASLLA GGSFALPSVA QEQAPQGQPA EQSMPDQPPA DQSMPEDATG
DTPVAEAQVQ LIGLGDSLMA GYQLQGDEAL TSQLEKALHD KGMNVSIGNA GVSGDTTEGG
LARVDWSVPD GTQGVILELG ANDALRGIAP EESEKNLAAI IEKLQARKIG VLLVGMIAPP
NMGADYAKRF NPIYQRLAEK YKIPLYPFIL EGVVTDATLK LGDGMHPNAK GVGVMVEHML
PAVQSFAKGL EDKVN
|
|---|
| |