| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4172 |
|---|
| Symbol | |
|---|
| ID | 7386943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3516602 |
|---|
| End bp | 3517042 |
|---|
| Gene Length | 441 bp |
|---|
| Protein Length | 146 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643652861 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002551034 |
|---|
| Protein GI | 222150077 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3339] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0445378 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGAGG CGAAACTGGA CGATGTGAAG ATTGGTGAAA TTCTTCTGCC GGGCGATGAA
GCCGAACAGC AAAAGCAGGA GCAAAAGCTG AGCCGCACCT TCTGGCCGAA GATGCGCAAA
GCCATTCGTC ACATCCCGTT TTCCCGGGAT GTGATTGCCG CTTTCTACTG CGCGACGGAT
CGGCAGACGC CGCTTAGGGT GCGGGGCATC CTGCTGGCGG CGCTTGGCTA TTTCGTCCTG
CCGTTTGATG CCATTCCCGA CATGCTGGCC TTTGTCGGCT TTACCGACGA CATTGCCGTG
CTGACGACTG CGCTGGCGAT GATCAACGGC CATATCAAGG AACGTCATTA CGATGCAGCC
GATGCCGTCT TGGCCGATGA CGGCGATCCG GTGCAAGGTG GGGAAAAAAG CGCACCACAT
GGGCAGGCTG AGCGGGGCTG A
|
|---|
| Protein sequence | MGEAKLDDVK IGEILLPGDE AEQQKQEQKL SRTFWPKMRK AIRHIPFSRD VIAAFYCATD
RQTPLRVRGI LLAALGYFVL PFDAIPDMLA FVGFTDDIAV LTTALAMING HIKERHYDAA
DAVLADDGDP VQGGEKSAPH GQAERG
|
|---|
| |