Gene Avi_4164 details

Gene Information

• Locus tag: Avi_4164
• Symbol: rhtB
• ID: 7386939
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3513322
• End bp: 3513963
• Gene Length: 642 bp
• Protein Length: 213 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643652857
• Product: RhtB family transporter
• Protein accession: YP_002551030
• Protein GI: 222150073
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1280] Putative threonine efflux protein

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCTTCA TTCCGGGCCT ACCGACCCTT CTAGCCTTCA CAGCCGCCTG CCTGTTGCTG 
GCCGCGACGC CGGGGCCGGA CATGACACTC TCCATCAGCC GGGCGCTGCG CGATGGCAAG 
GCGGCGGGTC TTGCCGTGCT GCTCGGCACC AATCTCGGGA TTGCGGTCCA TACGATGCTG 
GTGGCTTTCG GGGTCTCCGC CCTGATCGTT GCTTCGCCAA CGGCCTTTCT GATCCTAAAA 
AGCGGTGGGG CTGCTTATCT GGCCTGGCTC GCCTTTCAGG CGATCCGCCA CGGCTCAAAA 
TTCGTCGCCA CGCCTGAAGC GGGCGCAAAG GGTAGCGTGA AGGCGGCTTT TCTCAACGGG 
ATCTGGGTCA ATCTGCTCAA CCCCAAGGTT ATCATTTTCT TCATGACCTT CCTGCCGCAA 
TTCGTCACCG CCCATGACCC TGATGTCACA GGCAAGCTGC TGTTCCTCGG TTTCTGGTTC 
ATGCTGGTGT CGCTACCCGT CACGGTCGCC ATCGTGCTGG CCGCCGACAA GCTGGCTGGC 
TGGCTGCAAC AAAACCCGAA AGTGCTGAGG GGAATGGATT ACACCTTTGC AGGCGTGTTT 
TCAGTCTTCG CCGCCAAGAT CCTGATGACC CAAGCGCGAT AA 

 

Protein sequence

MTFIPGLPTL LAFTAACLLL AATPGPDMTL SISRALRDGK AAGLAVLLGT NLGIAVHTML 
VAFGVSALIV ASPTAFLILK SGGAAYLAWL AFQAIRHGSK FVATPEAGAK GSVKAAFLNG 
IWVNLLNPKV IIFFMTFLPQ FVTAHDPDVT GKLLFLGFWF MLVSLPVTVA IVLAADKLAG 
WLQQNPKVLR GMDYTFAGVF SVFAAKILMT QAR