Gene Avi_4156 details

Gene Information

• Locus tag: Avi_4156
• Symbol: typA
• ID: 7386932
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 3502624
• End bp: 3504489
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643652850
• Product: GTP-binding tyrosin phosphorylated protein
• Protein accession: YP_002551023
• Protein GI: 222150066
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0435584
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACTTCG CGCCAGAGCC ATCAGAGATC CTAATCATGA AGATTCGCAA TATCGCGATC 
ATCGCGCACG TTGACCATGG GAAAACTACC CTCGTTGACG AACTTCTGAA ACAGTCCGGT 
TCGTTCCGCG AAAACCAGCG CGTTGCAGAG CGCGTCATGG ACAGCAACGA TCTGGAAAAA 
GAGCGCGGCA TCACCATTCT CGCCAAGGCA ACCTCGGTTG AATGGAAGGG CGTTCGCGTC 
AACATCGTCG ATACCCCCGG CCACGCCGAC TTCGGCGGCG AAGTCGAGCG TATCCTGTCG 
ATGGTGGACG GCGCTATCGT TCTCGTCGAC TCCTCGGAAG GCCCGATGCC GCAGACCAAA 
TTCGTGGTCG GCAAGGCGCT TAAGGTTGGT CTTCGTCCAA TCGTTGCGAT CAACAAGATT 
GACCGTCCCG ATGGCCGCCA TGAAGAAGTC ATCAACGAAG TCTTCGACCT GTTCGCCAGC 
CTCGACGCCA CCGACGAGCA GCTCGACTTC CCGATCCTCT ACGGTTCCGG TCGTGATGGC 
TGGATGAATA TCGCCCCTGA AGGCCCGAAG GATCAGGGCC TCGCCCCGTT GCTGGACCTG 
GTTTTGCAGC ACGTTCCTGA GCCGAGCGTT GGCGACGAAG ACGGTGCGTT CCGCATGATC 
GGCACGCTGC TGGAAGCCAA CCCCTTCCTC GGCCGCGTCA TCACCGGTCG TATCCATTCC 
GGCTCGATCA AGCCGAACCA GTCGGTCAAG GTTCTGAGCC AGGACGGCAA GATCATCGAA 
ACCGGTCGTA TTTCCAAGAT CCTCGCGTTC CGTGGTATCG AGCGCACCGC GATTGATGAA 
GCCCATGCCG GTGACATCGT GGCGATTGCC GGTCTGTCCA AGGGTACGGT TGCCGATACA 
TTCTGCGATC CGTCCGTGAC CGAAGCGCTG GAAGCCCAGC CGATCGATCC GCCGACCGTC 
ACCATGTCCT TCCTCGTCAA CGACAGCCCG CTGGCTGGCA CCGAAGGTGA CAAGGTCACG 
AGCCGCGTTA TCCGTGACCG TCTGTTCAAG GAAGCCGAAG GCAATGTTGC CCTGAAGATT 
GAAGAATCGG AAGGCAAGGA TTCGTTCTTC GTGTCTGGCC GTGGCGAATT GCAGCTGGCC 
GTTCTGATCG AAACCATGCG TCGTGAAGGC TTCGAACTGG CTGTGTCACG TCCGCGCGTC 
GTGATGCACA AGGACGAGAA CGGCACCCTG ATGGAGCCGA TCGAAGAAGT CGTCATCGAC 
GTCGATGAAG AGCATTCCGG CGTTGTCGTG CAGAAAATGT CCGAGCGTAA GGCTGAAATG 
ACCGAGCTGC GGCCTTCCGG CGGCAATCGC GTTCGTCTGG TGTTCTATGC GCCCACCCGT 
GGCCTGATCG GCTACCAGTC GGAACTGCTG ACGGATACCC GTGGTACGGC GATCATGAAC 
CGCCTGTTCC ACAACTACCA GCCGTTCAAG GGTGAAATCT CCGGCCGTAA CAATGGCGTT 
CTGTTGTCCA ACCAGTCCGG TGAAGCCGTG GCCTACGCCA TGTTCAACCT TGAAGATCGC 
GGCCCGATGA TTATCGAGCC AGGCGAAAAG GTTTATGCAG GCATGATCGT CGGCATTCAC 
TCGCGCGACA ACGATCTGGA AGTCAACGTT CTCAAGGGCA AGCAGCTGAC CAACATCCGC 
TCTGCCGGCA AGGACGAAGC CGTCAAGCTG ACCCCGCCGA TCCGCATGAC GCTGGATCGC 
GCGCTGTCCT GGATTCAGGA CGACGAGCTG ATGGAAGTGA CGCCGAAGTC GATCCGTCTG 
CGCAAGTTCT ACCTGGACGC CAACGACCGC AAGCGCTTCG GCAAGGCCCG CGTCGCCCAG 
GCTTAA 

 

Protein sequence

MDFAPEPSEI LIMKIRNIAI IAHVDHGKTT LVDELLKQSG SFRENQRVAE RVMDSNDLEK 
ERGITILAKA TSVEWKGVRV NIVDTPGHAD FGGEVERILS MVDGAIVLVD SSEGPMPQTK 
FVVGKALKVG LRPIVAINKI DRPDGRHEEV INEVFDLFAS LDATDEQLDF PILYGSGRDG 
WMNIAPEGPK DQGLAPLLDL VLQHVPEPSV GDEDGAFRMI GTLLEANPFL GRVITGRIHS 
GSIKPNQSVK VLSQDGKIIE TGRISKILAF RGIERTAIDE AHAGDIVAIA GLSKGTVADT 
FCDPSVTEAL EAQPIDPPTV TMSFLVNDSP LAGTEGDKVT SRVIRDRLFK EAEGNVALKI 
EESEGKDSFF VSGRGELQLA VLIETMRREG FELAVSRPRV VMHKDENGTL MEPIEEVVID 
VDEEHSGVVV QKMSERKAEM TELRPSGGNR VRLVFYAPTR GLIGYQSELL TDTRGTAIMN 
RLFHNYQPFK GEISGRNNGV LLSNQSGEAV AYAMFNLEDR GPMIIEPGEK VYAGMIVGIH 
SRDNDLEVNV LKGKQLTNIR SAGKDEAVKL TPPIRMTLDR ALSWIQDDEL MEVTPKSIRL 
RKFYLDANDR KRFGKARVAQ A