Gene Avi_4116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_4116 
SymbollpdA 
ID7388910 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp3472463 
End bp3473869 
Gene Length1407 bp 
Protein Length468 aa 
Translation table11 
GC content59% 
IMG OID643652818 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_002550991 
Protein GI222150034 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.608117 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCATATG ATCTTGTTGT CATCGGTAGC GGCCCCGGCG GTTATGTCTG CGCGATCAAG 
GCTGCCCAGC TTGGAATGAA GGTGGCTGTT GTCGAGAAGC GTGCCACCTA TGGCGGCACC
TGCCTCAATA TCGGCTGCAT TCCATCGAAA GCCCTGCTGC ATGCGTCCGA AATGTTCCAC
CATGCCGCCC ATGGCATGGC TGAGCTCGGT GTGGATGTCA GCGCGCCGGT GCTGAACCTG
CCGAAGATGA TGGCGCACAA GGATGCGACC GTGAAAGCCA ATGTCGAAGG CGTGTCCTTC
CTGTTCAAGA AGAACAAGAT CGACGGTGTC ATCGGCACCG GCAAGATCGT GGCTGCCGGC
AAGGTCTCCG TCACCAATGA CAAGGGTGAA GAACAGATCC TTGAAACCAA GAACATCGTC
ATCGCCACCG GCTCGGATGT GGCTGGCATT CCCGGCGTTG CCGTGGATAT CGATGAAAAG
ATCATTGTCT CTTCCACCGG CGGTATTGCG CTGGACAAGG TGCCGGGCAA GATGATCGTG
GTTGGCGGCG GCGTGATTGG CCTTGAGCTT GGCTCGGTCT GGGCGCGTCT GGGTGCCAAG
GTCACGGTGG TCGAATATCT CGACACTATT CTCGGCGGCA TGGACGGCGA AGTCTCCAAG
CAGTTCCAGC GCATGTTGGT CAAGCAGGGC ATGGAATTCA ACCTCGGCGC TAAGGTAACC
GCTGTTGAAA AGACCGGTAC CGGTGCCAAG GTGACGTTCG AACCTGCCAA GGGCGGCGAA
GCCACCGTGC TGGAAGCCGA TGTCGTGCTG ATCGCCACGG GCCGCAAGCC TTACACCACA
GGCCTTGGGC TGGAAGACGT TGGTGTTGCC CTCGACAACC GTGGCCGCGT CGAAATCGAC
AATCACTTCA AGACCAATGT TGCCGGCATT TACGCCATTG GTGACGTGGT CAAGGGTCCA
ATGCTGGCGC ATAAGGCTGA AGATGAAGGT GTCGCACTTG CGGAAATCCT CTCCGGCCAG
CACGGCCACG TGAATTACGA TGTCATTCCG GGCGTGGTTT ACACCCAGCC GGAAGTCGCC
TCCGTCGGCA AGACGGAAGA AGAGCTGAAG GCCGCAGGCG TCGCCTACAA GGTCGGCAAG
TTCCCCTTCA CCGCCAATGG CCGCGCCCGC GCCATGCTGG CGACGGACGG TTTCGTCAAG
GTTCTCGCTG ATAAGGAGAC CGACCGGGTG CTTGGCGTTC ACATCATCGG CCTTGGGGCT
GGTGAAATGA TCCATGAAGC GGCTGTGCTG ATGGAATTCG GCGGCTCTTC GGAAGATCTT
GGCCGCACCT GCCATGCGCA TCCCACCATG TCGGAAGCCG TGAAGGAAGC AGCATTGGCC
ACCTTCGCCA AGCCGATTCA CATGTGA
 
Protein sequence
MAYDLVVIGS GPGGYVCAIK AAQLGMKVAV VEKRATYGGT CLNIGCIPSK ALLHASEMFH 
HAAHGMAELG VDVSAPVLNL PKMMAHKDAT VKANVEGVSF LFKKNKIDGV IGTGKIVAAG
KVSVTNDKGE EQILETKNIV IATGSDVAGI PGVAVDIDEK IIVSSTGGIA LDKVPGKMIV
VGGGVIGLEL GSVWARLGAK VTVVEYLDTI LGGMDGEVSK QFQRMLVKQG MEFNLGAKVT
AVEKTGTGAK VTFEPAKGGE ATVLEADVVL IATGRKPYTT GLGLEDVGVA LDNRGRVEID
NHFKTNVAGI YAIGDVVKGP MLAHKAEDEG VALAEILSGQ HGHVNYDVIP GVVYTQPEVA
SVGKTEEELK AAGVAYKVGK FPFTANGRAR AMLATDGFVK VLADKETDRV LGVHIIGLGA
GEMIHEAAVL MEFGGSSEDL GRTCHAHPTM SEAVKEAALA TFAKPIHM