Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_4116 |
Symbol | lpdA |
ID | 7388910 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 3472463 |
End bp | 3473869 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643652818 |
Product | dihydrolipoamide dehydrogenase |
Protein accession | YP_002550991 |
Protein GI | 222150034 |
COG category | [C] Energy production and conversion |
COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.608117 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCATATG ATCTTGTTGT CATCGGTAGC GGCCCCGGCG GTTATGTCTG CGCGATCAAG GCTGCCCAGC TTGGAATGAA GGTGGCTGTT GTCGAGAAGC GTGCCACCTA TGGCGGCACC TGCCTCAATA TCGGCTGCAT TCCATCGAAA GCCCTGCTGC ATGCGTCCGA AATGTTCCAC CATGCCGCCC ATGGCATGGC TGAGCTCGGT GTGGATGTCA GCGCGCCGGT GCTGAACCTG CCGAAGATGA TGGCGCACAA GGATGCGACC GTGAAAGCCA ATGTCGAAGG CGTGTCCTTC CTGTTCAAGA AGAACAAGAT CGACGGTGTC ATCGGCACCG GCAAGATCGT GGCTGCCGGC AAGGTCTCCG TCACCAATGA CAAGGGTGAA GAACAGATCC TTGAAACCAA GAACATCGTC ATCGCCACCG GCTCGGATGT GGCTGGCATT CCCGGCGTTG CCGTGGATAT CGATGAAAAG ATCATTGTCT CTTCCACCGG CGGTATTGCG CTGGACAAGG TGCCGGGCAA GATGATCGTG GTTGGCGGCG GCGTGATTGG CCTTGAGCTT GGCTCGGTCT GGGCGCGTCT GGGTGCCAAG GTCACGGTGG TCGAATATCT CGACACTATT CTCGGCGGCA TGGACGGCGA AGTCTCCAAG CAGTTCCAGC GCATGTTGGT CAAGCAGGGC ATGGAATTCA ACCTCGGCGC TAAGGTAACC GCTGTTGAAA AGACCGGTAC CGGTGCCAAG GTGACGTTCG AACCTGCCAA GGGCGGCGAA GCCACCGTGC TGGAAGCCGA TGTCGTGCTG ATCGCCACGG GCCGCAAGCC TTACACCACA GGCCTTGGGC TGGAAGACGT TGGTGTTGCC CTCGACAACC GTGGCCGCGT CGAAATCGAC AATCACTTCA AGACCAATGT TGCCGGCATT TACGCCATTG GTGACGTGGT CAAGGGTCCA ATGCTGGCGC ATAAGGCTGA AGATGAAGGT GTCGCACTTG CGGAAATCCT CTCCGGCCAG CACGGCCACG TGAATTACGA TGTCATTCCG GGCGTGGTTT ACACCCAGCC GGAAGTCGCC TCCGTCGGCA AGACGGAAGA AGAGCTGAAG GCCGCAGGCG TCGCCTACAA GGTCGGCAAG TTCCCCTTCA CCGCCAATGG CCGCGCCCGC GCCATGCTGG CGACGGACGG TTTCGTCAAG GTTCTCGCTG ATAAGGAGAC CGACCGGGTG CTTGGCGTTC ACATCATCGG CCTTGGGGCT GGTGAAATGA TCCATGAAGC GGCTGTGCTG ATGGAATTCG GCGGCTCTTC GGAAGATCTT GGCCGCACCT GCCATGCGCA TCCCACCATG TCGGAAGCCG TGAAGGAAGC AGCATTGGCC ACCTTCGCCA AGCCGATTCA CATGTGA
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Protein sequence | MAYDLVVIGS GPGGYVCAIK AAQLGMKVAV VEKRATYGGT CLNIGCIPSK ALLHASEMFH HAAHGMAELG VDVSAPVLNL PKMMAHKDAT VKANVEGVSF LFKKNKIDGV IGTGKIVAAG KVSVTNDKGE EQILETKNIV IATGSDVAGI PGVAVDIDEK IIVSSTGGIA LDKVPGKMIV VGGGVIGLEL GSVWARLGAK VTVVEYLDTI LGGMDGEVSK QFQRMLVKQG MEFNLGAKVT AVEKTGTGAK VTFEPAKGGE ATVLEADVVL IATGRKPYTT GLGLEDVGVA LDNRGRVEID NHFKTNVAGI YAIGDVVKGP MLAHKAEDEG VALAEILSGQ HGHVNYDVIP GVVYTQPEVA SVGKTEEELK AAGVAYKVGK FPFTANGRAR AMLATDGFVK VLADKETDRV LGVHIIGLGA GEMIHEAAVL MEFGGSSEDL GRTCHAHPTM SEAVKEAALA TFAKPIHM
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