Gene Avi_4092 details

Gene Information

• Locus tag: Avi_4092
• Symbol: cheW
• ID: 7388890
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3447435
• End bp: 3447914
• Gene Length: 480 bp
• Protein Length: 159 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643652798
• Product: chemotaxis protein
• Protein accession: YP_002550971
• Protein GI: 222150014
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0835] Chemotaxis signal transduction protein

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.410589
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAACAC CTATTACCCC TACCAGCTTC GGCGGTGAAA ACCTCGAAAT CATCGCGTTT 
CGCCTGCATG ATCAGGAGTT TTGCGTCAAG ACCACCACAA TCCGGGAAAT CCGCGGCTGG 
GCGCCTTCCA CGCCCATTCC GCATGCACCG GCCGATGTGA TCGGCGTGAT GAACCTGCGC 
GGTTCGGTCA TTCCGATCAT TGATCTTGCC TACAAGCTCG GCATGAAGAG CACGGTTGCC 
AATGAGCGCT CCGCCATTGT CGTCGCTGAA GTGCACAATA TGGTCATTGG CATGCTGGTG 
GACCGGGTGT CTGACATCCT GACCATCCCC TCCAGCCAGG TTCAGCCGGT TCCAGAAGTT 
TCGGCCTCTT TTGACAAGAC GTTTTCCGAA GGCATCATCG CCAATGAAAA CGGCATGATC 
TGCTTCCTGA ACCTTTCCAA GATGTTCAAG GGCAGCGAGC TGGAAGAGCT TGCGGCCTGA 

 

Protein sequence

MATPITPTSF GGENLEIIAF RLHDQEFCVK TTTIREIRGW APSTPIPHAP ADVIGVMNLR 
GSVIPIIDLA YKLGMKSTVA NERSAIVVAE VHNMVIGMLV DRVSDILTIP SSQVQPVPEV 
SASFDKTFSE GIIANENGMI CFLNLSKMFK GSELEELAA