Gene Avi_4071 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_4071 
SymbolcheD 
ID7388874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp3425004 
End bp3425558 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content57% 
IMG OID643652782 
Productchemoreceptor glutamine deamidase CheD 
Protein accessionYP_002550955 
Protein GI222149998 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG1871] Chemotaxis protein; stimulates methylation of MCP proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.130637 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGACG AAGCTGCGGC TCGCAGGGTC CATATTATTC AAGGTGAATA CAAGGTTGTC 
AGCGACCCGA ATGTGGTGCT TTCAACCATC CTGGGTTCCT GCGTGGCTGC ATGCATACGT
GATCCCATTG CCGGTGTCGG CGGTATGAAC CATTTCCTCC TGCCGGGCTC TGCCAATCCC
GGCATGGGAG GCGGGGATGC CACGCGCTAT GGCGTCCATC TGATGGAATT GCTGATCAAC
GGCCTCTTGA AGAAGGGCGC GCGGCGCGAT CGTCTGGAAG CCAAGATTTT CGGAGGCGCC
AAGACGATTG CGACGTTCTC GAATGTCGGC GAACAGAATG CTGCCTTTGC TGCGCAGTTT
CTGAAAGATG AAGGCATCAA GGTGGTTGGT TCTTCCACGG GCGGTGAGCA TGGCCGCAAG
CTGGAATTCT GGCCGATCAG CGGTCGTGCC CGCCAGTATC CTCTGACAGG AGCGGAAACG
CAAAAAACCG TGGCCATGGA ACAGCGGCCG GTCAAAGTGC AAAAGCCGGT GGAAAGCTCG
ATCGAGTTTT TTTAA
 
Protein sequence
MSDEAAARRV HIIQGEYKVV SDPNVVLSTI LGSCVAACIR DPIAGVGGMN HFLLPGSANP 
GMGGGDATRY GVHLMELLIN GLLKKGARRD RLEAKIFGGA KTIATFSNVG EQNAAFAAQF
LKDEGIKVVG SSTGGEHGRK LEFWPISGRA RQYPLTGAET QKTVAMEQRP VKVQKPVESS
IEFF