Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_4071 |
Symbol | cheD |
ID | 7388874 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 3425004 |
End bp | 3425558 |
Gene Length | 555 bp |
Protein Length | 184 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643652782 |
Product | chemoreceptor glutamine deamidase CheD |
Protein accession | YP_002550955 |
Protein GI | 222149998 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG1871] Chemotaxis protein; stimulates methylation of MCP proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.130637 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGACG AAGCTGCGGC TCGCAGGGTC CATATTATTC AAGGTGAATA CAAGGTTGTC AGCGACCCGA ATGTGGTGCT TTCAACCATC CTGGGTTCCT GCGTGGCTGC ATGCATACGT GATCCCATTG CCGGTGTCGG CGGTATGAAC CATTTCCTCC TGCCGGGCTC TGCCAATCCC GGCATGGGAG GCGGGGATGC CACGCGCTAT GGCGTCCATC TGATGGAATT GCTGATCAAC GGCCTCTTGA AGAAGGGCGC GCGGCGCGAT CGTCTGGAAG CCAAGATTTT CGGAGGCGCC AAGACGATTG CGACGTTCTC GAATGTCGGC GAACAGAATG CTGCCTTTGC TGCGCAGTTT CTGAAAGATG AAGGCATCAA GGTGGTTGGT TCTTCCACGG GCGGTGAGCA TGGCCGCAAG CTGGAATTCT GGCCGATCAG CGGTCGTGCC CGCCAGTATC CTCTGACAGG AGCGGAAACG CAAAAAACCG TGGCCATGGA ACAGCGGCCG GTCAAAGTGC AAAAGCCGGT GGAAAGCTCG ATCGAGTTTT TTTAA
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Protein sequence | MSDEAAARRV HIIQGEYKVV SDPNVVLSTI LGSCVAACIR DPIAGVGGMN HFLLPGSANP GMGGGDATRY GVHLMELLIN GLLKKGARRD RLEAKIFGGA KTIATFSNVG EQNAAFAAQF LKDEGIKVVG SSTGGEHGRK LEFWPISGRA RQYPLTGAET QKTVAMEQRP VKVQKPVESS IEFF
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