Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_4006 |
Symbol | |
ID | 7387339 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3373813 |
End bp | 3374646 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643652730 |
Product | short chain dehydrogenase |
Protein accession | YP_002550904 |
Protein GI | 222149947 |
COG category | [R] General function prediction only |
COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCGCAC AGAAAAGCAT TATCGTCACC GGCTGCTCCT CCGGCATCGG AGCCTACTGC GCCCGCGCCC TGAAGCAGGA TGGCTGGCGG GTATTTGCCA CCGTGCGCAA GGCCGAAGAC TTAAAAGCCC TTGAGGATGA CGGTCTTGAA GCGCTGCTGA TGGATTACCG CGACACGGCA AGCATCGCGG CCCTCGCTGA GACCGTGTTG TCGCGCACCG GCGGGCGGCT GGACGCCCTG TTCAACAATG GCGCCTATGG ACAGGCAGGT GCGGTCGAAG ATCTGCCAAC GGAGGCGCTT CGTGAACAGT TCGAGACCAA TGTCTTCGGC TGGCACGACC TGACACGGCG GATCGTGCCG GTGATGCGCG CGCAAGGGTC GGGCCGTATC GTGCAATGCT CGTCTATTCT CGGCCTCATT CCCTATCGCT GGCGCGGCGC CTATACGGCG TCCAAATTTG CGCTGGAGGG CCTGTCGCTG ACCCTGCGCA TGGAGCTGGA CGGCAGCGGC GTCATGGTCA GCCTAATCGA GCCGGGTCCG ATAGAAAGCC GTTTTACCGC CAATTGCCTT GAGGCCATCA AACGCAATAT CGACGTGGAA AATTCGGTCC ATGCCGCAGA TTACCGGCGT CAATTGGCCC GCCTTGACGG CACCGGACCG AAAAAACGCC ACAAGCTTGG ACCGGATGCC GTGTATAAAG TGTTGCAGCA CGCCTTGACC GCGAAGCGTC CACGGCCACA TTATCTGGTC ACAAAACCGG CGAAACAGGG CGTCGCACTC AAACGGCTGA TGCCGTCCGA TCTCTTCTAT CGGCTGATGC GGGCGCTGGA TTGA
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Protein sequence | MAAQKSIIVT GCSSGIGAYC ARALKQDGWR VFATVRKAED LKALEDDGLE ALLMDYRDTA SIAALAETVL SRTGGRLDAL FNNGAYGQAG AVEDLPTEAL REQFETNVFG WHDLTRRIVP VMRAQGSGRI VQCSSILGLI PYRWRGAYTA SKFALEGLSL TLRMELDGSG VMVSLIEPGP IESRFTANCL EAIKRNIDVE NSVHAADYRR QLARLDGTGP KKRHKLGPDA VYKVLQHALT AKRPRPHYLV TKPAKQGVAL KRLMPSDLFY RLMRALD
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