| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3985 |
|---|
| Symbol | |
|---|
| ID | 7387325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3356877 |
|---|
| End bp | 3358532 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643652715 |
|---|
| Product | AMP-(fatty) acid ligase protein |
|---|
| Protein accession | YP_002550890 |
|---|
| Protein GI | 222149933 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCTAC CTGCCGGCGC TTCCTATGAG GCTCTCTGTC ATGCGTTTTC CTGGTCCATA
CCAGCTCAGT TCAACATGGG ACGGGCCGTT TGCGATGAAT GGGCCGCCCG CGAGCCGGAC
CGGATCTGCC TTGAGCATTT TTTACCTGAC GGCGCGCATC GAACTTTAAC CTATGGGGCG
CTTGCTGCGC GATCCAACGC CTTCGCGGAT GCTCTAAGCC AGCTCGGCAT TGGCCCTGGG
GAGCGGGTTG CTCTGCTGCT ACCGCAGGGG TTTGAGACTG TCATCGCCCA TGTGGCGATT
TACAAGCTTG GCGCGATCGC TCTGCCGCTG GCCTTGCTAT TTGGCGCCGA TGCATTGGAA
TATCGGCTGA AGACGGCGGG CGCCTGCGCG GTCATCACCA ATGATTTCGG TCTGTCGCGG
CTGGAGCCTA TTCGGGCCAG CCTGCCGGAC CTTCGGGAGG TTATTTCCAT TGGCACGCCT
TCTCCCAGCG TCCTTTCCTT TGAAACTCTA TGGCAGAGCG GTTCCGCGTC TTTTGAGGGG
CCACAGACCG GGCCAGACGA TCCGGCACTG ATGATTTTCA CCTCTGGCAC GACCGGTGCG
CCGAAGGGCG CTCTGCATGG GCATCGGGTG CTTGCCGGTC ACATTCCAGG CTTCCAGCTT
GCCCATGACG GTCTACCGCA ACCGGGCGAC AGAATCTGGA CGCCTTCGGA CTGGGCTTGG
GCTGGCGGGC TTTTGAATGT GCTGATGCCA GCCCTGATGC TGGGGGTTCC GGTCGTGTCG
TCGCCTGCCC AGAAATTTGA TCCGGCCATG GCCTTTCGCA TCATGGCGGA GATGAAGGTG
CGCAATGCCT TCATTCCGCC CACCGCCTTG CGGCTGCTCA AAACGGTGAA CAATCCGCGC
CAGCATTATG ATCTTGTGCT GCGTTCCATC GGTTCGGCAG GGGAATCGCT GGGGCGGGAA
ACCTATCAAT GGGTCAAGAC GGCGCTTGGT ATCACGCCCA ATGAGTTCTA TGGGCAGACC
GAATGCAATT TCGTGCTGTC ATCGGCAGCC CGGCTGGGCG TCAGCAAGGC AGGCGCCATA
GGCAAGCCGG TGCCGGGCCA CCGCGTGGCA ATTATCGATG ACAAAGGCAG GGAGCTGCCA
GTCGGCAAGG TCGGACAGGT GGCGATTGCC CGGCCTGACC CGGTGATGTT CCTGGAATAT
TGGAATGATC CGCAGGCGAC CCGCCAGAAA TTCATTGGTG ACTGGATGCT GACCGGTGAT
CTCGGACGCC AGGATAGCGA GGGCTATGTG GAGTTTTTCG GTCGCGACGA TGATGTCATT
ACGTCATCCG GCTACCGTAT CGGCCCGGCG GAAATCGAGG ATTGTCTGGT TGGTCATCCG
GCTGTTCGCC TGGCGGCGGC GGTGGGCAAG CCCGATCCGG TGCGAACTGA AATCGTCAAG
GCCTATGTGG TGCTCGCGCC GGGTTTTCAG GCTGGACCGG CCTTGGCCCG TGACATTGCT
GATTGGGTCA AGCAGCGGCT GTCCATGCAC GAATATCCGC GTGAAGTGGA GTTTATCACC
GATATGCCGC TGACCACCAG TGGCAAGGTG ATCCGCCGCC TGCTGCGTGA GCGCGATGAA
CCGCAACAGG CACAGCCGGG CGTGATGACT GGATGA
|
|---|
| Protein sequence | MFLPAGASYE ALCHAFSWSI PAQFNMGRAV CDEWAAREPD RICLEHFLPD GAHRTLTYGA
LAARSNAFAD ALSQLGIGPG ERVALLLPQG FETVIAHVAI YKLGAIALPL ALLFGADALE
YRLKTAGACA VITNDFGLSR LEPIRASLPD LREVISIGTP SPSVLSFETL WQSGSASFEG
PQTGPDDPAL MIFTSGTTGA PKGALHGHRV LAGHIPGFQL AHDGLPQPGD RIWTPSDWAW
AGGLLNVLMP ALMLGVPVVS SPAQKFDPAM AFRIMAEMKV RNAFIPPTAL RLLKTVNNPR
QHYDLVLRSI GSAGESLGRE TYQWVKTALG ITPNEFYGQT ECNFVLSSAA RLGVSKAGAI
GKPVPGHRVA IIDDKGRELP VGKVGQVAIA RPDPVMFLEY WNDPQATRQK FIGDWMLTGD
LGRQDSEGYV EFFGRDDDVI TSSGYRIGPA EIEDCLVGHP AVRLAAAVGK PDPVRTEIVK
AYVVLAPGFQ AGPALARDIA DWVKQRLSMH EYPREVEFIT DMPLTTSGKV IRRLLRERDE
PQQAQPGVMT G
|
|---|
| |