| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3983 |
|---|
| Symbol | |
|---|
| ID | 7387323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 3354156 |
|---|
| End bp | 3355559 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643652713 |
|---|
| Product | polysaccharide biosynthesis associated protein |
|---|
| Protein accession | YP_002550888 |
|---|
| Protein GI | 222149931 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTTA TCCAGAGGGT GGAACATCTC CTGCCAGCCC GGCTGCATGG CCCGCTGCGC
AGGATCGTCG CCGCCTTGTC CGCTCACGAC GATGTGGCCC GCGCCCAGCG CATGGCGCTG
ATTGCCTTTG CCATCCGCAT CGTCAGCGCA GCGATTGCCT TTTTCTCGCA GATCGTCCAA
GCCCGGCTGA TGGGCGATTT CGAATACGGT ATTTTCGTCT TCGTCTGGGT CTTGGTCGTA
CTGTTCGGCA ATCTATCCTG CCTGGGCTTT CATTCGACCG TCATCCGCTT TCTGCCGCAA
TATCACGCCC GAGGCGAAAT TCCAGAAATC CGTGGCATCA CGGTCACCAT CCGGATCTTC
GCGCTTGGCC TCGCCAGCTG TTTGACTGCA ACCGGTCTTA TCCTGTTGAA TTTTTTCGGA
GATCGGATTG CTGGCTACTA TCTGACGCCG CTGTTTCTCG GCCTGTTCGC ACTGCCGATG
ATTGCGCTGG GCGATGTGCT TGACGGGACG GCGCGCGCCA ATAGCTGGCC CGTTGCAGCC
CTCAGCCCCA CCTATATCGT CAGGCCCGTG CTGATCCTGG CCTTCATGCT GCTGGCCGTC
ATGCTGGGCG CGCCACGCAC CGCCACCACC GCCATGCAGG CGGCCCTTGC CGCCACTTAT
GTCACGACAC TCAGCCAATT CGCCACCATT CACTGGCGTC TGCGGCGCAA ATATCTACGG
GGCCCTCGGC GGATCGATTT CATGGTCTGG TTTCGCGTTG CCATCCCGAT TTTCCTGATC
GAGGGCTTTC TGTTTCTGCT GACCAATTCC GATGTCATGG TGGTCGGGCT TTATCTGCCA
CCCGACCAGG TCGGGATCTA TTTTGCCGCG GCAAAAACCA TGGCCCTGGT GCAATTCGTC
TATTTCGCGG TCAAGGCCGC AGCCGGACCG CGCTTTTCAG CACTGATGAA TGAAGATGAT
ATCCGGCCGC TGGCCCTGTT TGCCGGCAGA ATGGCCCGCT GGTGCTTTTG GCCGTCGCTG
ATCATCGGTC TTCTGGTGCT GGCGGCAGGC GAAGTCTTGC TCGGTCTGTT CGGCCCGAAT
TTCACGGCAG GCTATCCATT GATGGCCATT CTGTTTGCCG GTGCCCTGAC CAAGGCGCTG
ATCGGCCCCG GTGAGATGCT CCTGACCATG GCCGGGCGAC AAAAATTGTG TGTGCTACTA
TATGTGATTG CTTTAGCATC TAATATCGGG CTGAATGTGA CTCTCATTCC GCTTTATGGC
CTCACCGGCG CGGCAACGGC TGCCGCCTCG GCAATGTTGG TGGAAGCGAT CTTGTTACAC
ATTGCCGTGC GCTATGCGCT TGGCATTGTC TTATTTGCAT TTGCCGACCC ATTGTCTCGC
ATGAAGCAAG ACAGGCCCGC ATGA
|
|---|
| Protein sequence | MAVIQRVEHL LPARLHGPLR RIVAALSAHD DVARAQRMAL IAFAIRIVSA AIAFFSQIVQ
ARLMGDFEYG IFVFVWVLVV LFGNLSCLGF HSTVIRFLPQ YHARGEIPEI RGITVTIRIF
ALGLASCLTA TGLILLNFFG DRIAGYYLTP LFLGLFALPM IALGDVLDGT ARANSWPVAA
LSPTYIVRPV LILAFMLLAV MLGAPRTATT AMQAALAATY VTTLSQFATI HWRLRRKYLR
GPRRIDFMVW FRVAIPIFLI EGFLFLLTNS DVMVVGLYLP PDQVGIYFAA AKTMALVQFV
YFAVKAAAGP RFSALMNEDD IRPLALFAGR MARWCFWPSL IIGLLVLAAG EVLLGLFGPN
FTAGYPLMAI LFAGALTKAL IGPGEMLLTM AGRQKLCVLL YVIALASNIG LNVTLIPLYG
LTGAATAAAS AMLVEAILLH IAVRYALGIV LFAFADPLSR MKQDRPA
|
|---|
| |