Gene Avi_3955 details

Gene Information

• Locus tag: Avi_3955
• Symbol: prfA
• ID: 7387303
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 3330909
• End bp: 3331988
• Gene Length: 1080 bp
• Protein Length: 359 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643652693
• Product: peptide chain release factor 1
• Protein accession: YP_002550868
• Protein GI: 222149911
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0216] Protein chain release factor A
• TIGRFAM ID: [TIGR00019] peptide chain release factor 1

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCGAAGC TTCCTGTCGA TAAAATGCGC GAGCTTGAGC GCCGGTTTGG CGAAATCGAG 
GCGCGCATGT CCGCCGGGCC TGCCGCCGAT GTCTATGTCA AGCTTGCCTC GGAATATTCC 
GAGTTGCAGC CGGTGGTCAA AGCCATCCGG GAATTGGGGT TGGCGGAAAA GGAAGTTGCT 
GATCTGAAGG CGCTGCTGGC CGACAAGTCC ACGGACCGCG AGATGCGCGA TCTGGCGGAA 
ATGGAGCTGC CGGATGTCGA GGCGCGGCTG GAAGGACTGG AAAAGGAAAT CCAGATCCAG 
CTTTTGCCCA AGGATGCCGC CGACGAAAAA AGCGCGATCC TGGAAATTCG CGCTGGAACG 
GGTGGGTCCG AAGCCGCGTT GTTTGCCGGT GACTTGTTTC GGATGTATGA GCGTTTCGCG 
GCGGGCAAGG GCTGGAAAGT TGAGGTCCTG TCTTCCAGCG AGGGCGATGC CGGGGGCTTT 
AAGGAAATTA TCGCCACCGT GACCGGGCGA GGGGTCTTCT CCAAGCTGAA ATTCGAATCC 
GGTGTTCACC GGGTGCAGCG CGTTCCCGAT ACGGAGACGC AAGGACGTAT CCATACGTCG 
GCTGCTACCG TGGCGGTTTT GCCCGAGGCG GAAGAGATCG ATATCGAGGT TCGGGCTGAA 
GACATTCGCA TCGATACGAT GCGCTCCTCC GGGGCAGGCG GCCAGCACGT CAACACCACG 
GACTCTGCGG TGCGCATCAC CCATCTGCCG ACCGGCCTGG TGGTGACCAG CTCAGAAAAA 
TCCCAGCACC AGAACCGGGC AAAAGCCATG CAGGTGCTGC GTTCGCGTCT GTTCGACATG 
GAACGCCAGC GGGCTGACAG CGAACGATCG GCTGATCGCA AGAGCCAGGT TGGCTCCGGT 
GACCGGTCCG AGCGGATCCG CACCTATAAT TTCCCGCAGG GCCGGGTGAC CGATCACCGG 
ATCAACCTGA CCCTCTACAA GCTCGACCGG ATGATGATGG GTGAAATCGA TGAAGTGGTC 
GATGCCCTGA TCGCCGATTA TCAGGCTGGA CAATTGGCGC AACTCGGCGA ACAGGCATGA 

 

Protein sequence

MAKLPVDKMR ELERRFGEIE ARMSAGPAAD VYVKLASEYS ELQPVVKAIR ELGLAEKEVA 
DLKALLADKS TDREMRDLAE MELPDVEARL EGLEKEIQIQ LLPKDAADEK SAILEIRAGT 
GGSEAALFAG DLFRMYERFA AGKGWKVEVL SSSEGDAGGF KEIIATVTGR GVFSKLKFES 
GVHRVQRVPD TETQGRIHTS AATVAVLPEA EEIDIEVRAE DIRIDTMRSS GAGGQHVNTT 
DSAVRITHLP TGLVVTSSEK SQHQNRAKAM QVLRSRLFDM ERQRADSERS ADRKSQVGSG 
DRSERIRTYN FPQGRVTDHR INLTLYKLDR MMMGEIDEVV DALIADYQAG QLAQLGEQA