| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3951 |
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| Symbol | clpB |
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| ID | 7387300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3325783 |
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| End bp | 3328389 |
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| Gene Length | 2607 bp |
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| Protein Length | 868 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643652690 |
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| Product | ATP-dependent Clp protease ATP-binding subunit |
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| Protein accession | YP_002550865 |
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| Protein GI | 222149908 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGTAG AAAAATATTC CGAACGGGTG CGCGGCTTTT TGCAGTCTGC CCAGACGCAT
GCGCTGTCGG AAGGCCACCA GCAATTTACC CCTGAACATG TGTTGAAAGT GCTTCTGGAT
GATGAGCAGG GCATGGCCTC CTCGCTGATC AGCCGCGCGG GCGGCGACCC AAAGGAAGTC
AGGATCGCCA ATGATGCAGC GCTTGCCAAG CTGCCGAAAG TGTCGGGCGG CAATGGTCAG
GTCTATCTTG CCCAGCCCCT GGCCCGGGTG TTTTCCACCG CGGAAGACGC GGCCAAGAAG
GCGGGCGACA GTTTCGTTAC CGTCGAGCGG CTGCTGTTGG CCCTGGCGGT CGAAACCTCG
GCATCCACAT CCGCCAGCCT GAAAAAGGGC GGGGTTACGG CTGCGGCGTT GAACCAAGTG
ATCAATGATG TCCGCAAGGG GCGCACCGCC GACACCGCCA ATGCCGAACA GGGCTTCGAT
GCCTTGAAGA AATATGCCCG TGACTTGACG GCAGAGGCGC GAGAAGGCCG GCTCGATCCG
GTGATTGGCC GCGACGATGA AATTCGCCGC ACGATGCAAG TCCTGTCACG CCGCACCAAG
AACAATCCCG TCCTGATTGG TGAGCCCGGC GTCGGCAAGA CGGCGATTGC CGAAGGCCTG
GCTATTCGTA TCGTCAATGG CGATGTGCCG GAGAGTCTGA AAGACAAGAA ATTGATGGCG
CTGGATATGG GCTCGCTGAT TGCCGGCGCC AAATATCGCG GCGAATTCGA GGAACGCTTG
AAGGCCGTGT TGAACGAAGT TCAGGCCGAT AACGGCGAGA TCATCCTGTT TATCGACGAA
ATGCACACGC TGGTCGGCGC GGGCAAGAGC GATGGCGCTA TGGATGCGTC CAACTTGCTG
AAACCCGCAC TGGCGCGTGG CGAATTGCAT TGCGTTGGGG CAACGACGCT GGACGAATAT
CGCAAGCATG TGGAAAAAGA CCCGGCGCTT GCACGGCGTT TCCAGCCTGT GATGGTGGAT
GAGCCGACGG TGGAGGATAC GATTTCCATC CTGCGCGGCC TCAAGGAAAA ATATGAGCAG
CATCACAAGG TTCGGATTGC CGATTCGGCC ATCGTCGCAG CTGCGACCTT GTCGAATCGT
TACATCACCG ACCGCTTCCT GCCGGACAAA GCCATCGACT TGATGGACGA AGCTGCCTCG
CGTCTTCGCA TGCAGGTGGA TTCCAAGCCG GAAGAGCTGG ATGAATTGGA CCGCCGTATC
ATTCAGTTGA AGATCGAGCG GGAAGCCCTG AAGAAGGAAA CCGACATCGC GTCCGCCGAC
CGGTTGAAGC GGCTGGAAAG CGAATTGGCC TCGCTGGAAG AAGAAGCCGA TGCGCTGACG
GCCCGCTGGC AGTCGGAAAA ACAGAAGCTG GGTCTTGCCG CCGATCTCAA GCGTCAGCTT
GATGAGGCTC GCAACGACTT GGCCATCGCC CAGCGCAAGG GCGAATTCCA GCGTGCCGGC
GAACTGGCCT ATGGTGTTAT TCCAGGCCTC GAAAAGCAGT TGACCGATGC CGAGGCAAAG
GATGCCTCTG GCGCGGCCAG CATGGTGCAG GAAGTGGTAA CACCCGACAA TATCGCTCAT
ATCGTCTCGC GTTGGACCGG CATCCCGGTG GACCGGATGT TGCAGGGCGA ACGGGAAAAG
CTGCTGAGAA TGGAGGACGA ACTGGCAAAA TCGGTGGTCG GGCAGGGCGA TGCGGTGCAG
GCCGTATCGC GGGCCGTGCG CCGTTCGCGG GCCGGACTTC AGGACCCCAA CCGGCCGATT
GGCTCCTTCA TCTTCCTCGG TCCGACTGGC GTCGGCAAAA CAGAGTTGAC CAAGTCCCTG
GCTCGGTTCC TGTTCGATGA TGAAACGGCC ATGGTTCGCC TCGACATGTC GGAATATATG
GAGAAACACT CCGTATCCCG GCTGATTGGC GCGCCTCCGG GCTATGTCGG CTATGAGGAA
GGCGGCGCTC TGACGGAATC GGTGCGGCGC AAGCCCTATC AGGTCGTGCT GTTCGATGAG
ATCGAAAAGG CGCATCCCGA TGTCTTCAAC GTGCTCTTGC AGGTTCTGGA TGACGGTCGC
CTGACGGATG GCCAAGGCCG CACGGTGGAT TTCAAGAACA CGATCATCAT CATGACGTCC
AATCTCGGGG CCGAATATCT GACAGCCCTT GGTGAGAACG AGGATGTCGA CAGTGTTCGC
GACCAGGTGA TGAGCGTTGT CCGGGCCTCT TTCCGTCCCG AATTCCTCAA CCGTGTCGAT
GAGATCATCC TGTTCCATCG CCTGCGGCGC AGTGAAATGG GTGCGATTGT CGAGATCCAG
ATGCAGCGGC TCTTGGCTCT GTTGGCAGAA CGCAAGATCA CGGTCGATCT TGGCGGGGAT
GCCCGCGATT GGATGGCCAA TAAGGGCTAT GACCCGGTTT ATGGTGCAAG GCCATTGAAA
CGGGTGATCC AGAAATACTT GCAGGACCCG CTCGCCGAGC AGATCCTGTC AGGCGAAGTG
CTTGACGGTA GCGAGGTGAA AATCACCGCC GGTTCGGACC GGTTGCTGAT CAAGCCGGTC
AAGCCGATGG ATCAGGTCGC AGCCTGA
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| Protein sequence | MNVEKYSERV RGFLQSAQTH ALSEGHQQFT PEHVLKVLLD DEQGMASSLI SRAGGDPKEV
RIANDAALAK LPKVSGGNGQ VYLAQPLARV FSTAEDAAKK AGDSFVTVER LLLALAVETS
ASTSASLKKG GVTAAALNQV INDVRKGRTA DTANAEQGFD ALKKYARDLT AEAREGRLDP
VIGRDDEIRR TMQVLSRRTK NNPVLIGEPG VGKTAIAEGL AIRIVNGDVP ESLKDKKLMA
LDMGSLIAGA KYRGEFEERL KAVLNEVQAD NGEIILFIDE MHTLVGAGKS DGAMDASNLL
KPALARGELH CVGATTLDEY RKHVEKDPAL ARRFQPVMVD EPTVEDTISI LRGLKEKYEQ
HHKVRIADSA IVAAATLSNR YITDRFLPDK AIDLMDEAAS RLRMQVDSKP EELDELDRRI
IQLKIEREAL KKETDIASAD RLKRLESELA SLEEEADALT ARWQSEKQKL GLAADLKRQL
DEARNDLAIA QRKGEFQRAG ELAYGVIPGL EKQLTDAEAK DASGAASMVQ EVVTPDNIAH
IVSRWTGIPV DRMLQGEREK LLRMEDELAK SVVGQGDAVQ AVSRAVRRSR AGLQDPNRPI
GSFIFLGPTG VGKTELTKSL ARFLFDDETA MVRLDMSEYM EKHSVSRLIG APPGYVGYEE
GGALTESVRR KPYQVVLFDE IEKAHPDVFN VLLQVLDDGR LTDGQGRTVD FKNTIIIMTS
NLGAEYLTAL GENEDVDSVR DQVMSVVRAS FRPEFLNRVD EIILFHRLRR SEMGAIVEIQ
MQRLLALLAE RKITVDLGGD ARDWMANKGY DPVYGARPLK RVIQKYLQDP LAEQILSGEV
LDGSEVKITA GSDRLLIKPV KPMDQVAA
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