Gene Avi_3949 details

Gene Information

• Locus tag: Avi_3949
• ID: 7387978
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3323754
• End bp: 3325700
• Gene Length: 1947 bp
• Protein Length: 648 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643652689
• Product: hypothetical protein
• Protein accession: YP_002550864
• Protein GI: 222149907
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0739] Membrane proteins related to metalloendopeptidases

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCTTGG ATAAGAACCT GTTGCGATCC CTTGGCATGG AACCTCCGAT CCTCGCGGAT 
GGAAGGCGTG CGCCTGATCG TCGGGAAATT TCGCTACGCT GGCTGACAGG CACATTTCTC 
ACCGGTATCA CCTCGTCAGT CCTGATGGGC GTGGCACTTT TTGCAGCACT GGATGGCCGC 
CAGCAATTGG CGATACCGGC TGAGGCCTTT GCGCTCGCGG ATCTCAAGCA ACACAATGAT 
AGTGCCGATG GCGTGCGCCG CGGTGGACGT TTGATCAATA CTGTCATCTC AGCCAAAACC 
GCAAGCCGGT CGGTGCTGGA TGTGTCAACC GTGATCCGCA GCGGAGACAA GGATGTGGTA 
CGCCGCCAGC CATTCACTCA TTTGAAAATG CTGGTGTCGA CCAGTCTTTC CACTCAGGAA 
AACTATCCGC CGTTTGATCC CTTAAGTATT TTTGCCGGCG ACGAACAGAC GGTAACCCCG 
CGCACCGGGA CGATCTACGG TTCAAATGTC GATTCCGAGA TCAGCCTGAA GACGGTTGCC 
TTTCCTGTAA ACGGCACACC TTTCAAGGCT GCGCCGGGCA TGACCTCGGA TGAGGTAGAA 
GAAAACGTAC GATCCAATGG CTCCGTCTTG ACGGAAGGAA CGCAACAGGT TTCCGGGCTC 
TATTATATTG ACCCAGAGCG CTTTGCCGAT CCGGATGCCG ATCTCGACAT AAATCCCGGC 
CTTTCGGCCC GCGTCGTTGA GCAAAATCTG AGCGTCTCGA CACCGGACCC GGTTACGCCG 
GATACCGACG AATATGCCGA CGATATTATC CCGGTTCGCC GCGAGCAGAC GATCATTGCC 
GCCTTGACCG GTGCGGGTTA CCCCGAAGCC AAAGCCAAGG CGATTTCCGA CAGCCTTAGT 
GAAAAATTGG GAAGCCCCTC GCTGCAATCC GGGGATGTTC TGCGCCTCGG CATTATTCAG 
CGCGGGGAAC AGGCCCGTGT GGTCCGGTTC AGCGCCTATC GTGGCGGCAA GCATCTGGTC 
ACAATGGCGG TTGATGATCA GAGCCATCTC GTTGAAGGGT CTGAGCCGCC TATGCTGGAT 
GCCATTGCAA CGGCCTTTGA TGAGAATAGC CCTCCGGTGA TGGCAAGCCG TGACTTACCC 
AGTATTTATG ATGGAATTTA CCGGGCTTCC CTTTCCTACG GGCTCAGCAA GGAACTGACA 
GGGCAAATGG TTCGGCTGCT GGCCAGCAGC GTGGATTTGC AGGCGCCGCT GAGGCCGACT 
GACGGGTTGG AAGTTTTCTA TTCGGCTGCG GATGAAAGCG GCAAGGCCGC GGCGGATTCA 
GAACTGCTTT TCCTGCGGGC GCGTTTTGGC GACACGACAA CATCGCTCTA CCGTTTTCAG 
GACCCATCCG ACAATTCCGT CGATTATTTT GACGAAAACG GTAAGACCAA TCGCCAGTTC 
CTGATTCGCA ATCCGGTTCC GAATGGTGTA TTCCGCTCGG GCTTCGGCAT GCGCAGACAT 
CCGATCCTTG GTTATTCGCG CATGCATACC GGCGTCGATT GGGGTGCCCC ATCCGGTTCG 
CCGATCATCG CTGCCGGCAG CGGAACGGTT GAAAAAGCAG GGTGGGATTC CGGCGGCTAT 
GGCAACCAGA CAATCATTCG CCATCCGAAC GGCTATGAAA GCTCCTATAA CCACCAAAGC 
GCCATCGCCA AAGGTGTCGT TGCCGGGGCA AAGATCCGCC AGGGTCAGGT CATCGGCTGG 
GTGGGGACGA CCGGTGAGTC CACCGGCCCG CACCTGCATT ACGAAATCAT CGTCAACGGC 
ACCAAGGTCG ATCCGATGAA GGTGCGCCTG CCGGACGGCA AGTCGCTGAA CGGCGGTACG 
TTGGCAAAAT TCGAGCAGGA GCGGCAGCGC ATTGACGATC TGCTGAGCAG TGCCGAGAAA 
AATCGGCAGC TTGCTGCCAA CAATTGA 

 

Protein sequence

MSLDKNLLRS LGMEPPILAD GRRAPDRREI SLRWLTGTFL TGITSSVLMG VALFAALDGR 
QQLAIPAEAF ALADLKQHND SADGVRRGGR LINTVISAKT ASRSVLDVST VIRSGDKDVV 
RRQPFTHLKM LVSTSLSTQE NYPPFDPLSI FAGDEQTVTP RTGTIYGSNV DSEISLKTVA 
FPVNGTPFKA APGMTSDEVE ENVRSNGSVL TEGTQQVSGL YYIDPERFAD PDADLDINPG 
LSARVVEQNL SVSTPDPVTP DTDEYADDII PVRREQTIIA ALTGAGYPEA KAKAISDSLS 
EKLGSPSLQS GDVLRLGIIQ RGEQARVVRF SAYRGGKHLV TMAVDDQSHL VEGSEPPMLD 
AIATAFDENS PPVMASRDLP SIYDGIYRAS LSYGLSKELT GQMVRLLASS VDLQAPLRPT 
DGLEVFYSAA DESGKAAADS ELLFLRARFG DTTTSLYRFQ DPSDNSVDYF DENGKTNRQF 
LIRNPVPNGV FRSGFGMRRH PILGYSRMHT GVDWGAPSGS PIIAAGSGTV EKAGWDSGGY 
GNQTIIRHPN GYESSYNHQS AIAKGVVAGA KIRQGQVIGW VGTTGESTGP HLHYEIIVNG 
TKVDPMKVRL PDGKSLNGGT LAKFEQERQR IDDLLSSAEK NRQLAANN