Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3946 |
Symbol | sbcC |
ID | 7387297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3310963 |
End bp | 3314037 |
Gene Length | 3075 bp |
Protein Length | 1024 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643652681 |
Product | exonuclease protein |
Protein accession | YP_002550862 |
Protein GI | 222149905 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0419] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGACCTG TCCGCTTGGT GATGCAGGCC TTTGGCCCCT ATGCCGGACG CCAATCCATC GATTTTCGCG AAGCCGTCGC CGCTGGCCTG TTCGGCATCT ACGGCCAGAC GGGATCGGGG AAATCGACGA TTTTCAGCGC CATGACCTTT GCCCTATTCG GGGAAGCGGC GAGAGCCGAG CAGGACACCA TCTCGCTGCG CTCCGACCAT GCTTCGCCCG ACCTAGCAAC CGAGGTGGAA TTCGTATTCG ATCTTGGCGC CCGCCGCTAT GTCATCCGCC GGCGTCCCGA ACAGATGCGG CCAAAACAAC GCGGCGGTGG CGAAACCCGG GACGCCCACG AGGCCTGGCT GTTCGACGCC ACCGGGCTTG GTGAAAGCGA AATTACCGCC GCCCAGCCGG GCAAGGTGCT GGCTGAAAAA AAGATCGGTC TGGTACGCGA AAAAATCACC GATCTGCTCG GTTACGGTCC TGAACAGTTC AAGCAGATCG TGCTTCTGCC GCAGGGCCGG TTCGAGGCCT TTCTTGCCGC CAAAACCCAG GAACGACAAG ATATTCTCAG CGCCCTCTTC GATGTGTCGC TCTATCGCCG GCTAGCGGCA AAACTGAAGA GCGATGCCGA AAGCGCCGAA CGGCTGGTGC GCGAGGAGCG CGCCGTCTGC CTTCGCCGCC TCGGTGCCGA CGGGTTCGAC AGCATGCAGG CACTGATGGA CGGGATTGCC GAGGCGGCAT CGTCGCTCAC CGACCGGCAG CAAGCGGAAC AGCATTTACG GGCTGAGGCG GATGCCGCCC GCGCTTCGTT GCAAGCAGCG AGAGACACCG ATAACCAGTT CAAGTCCATG GACGCCGCTC GTCAGGCAAA ACAGAAAACC CTCGACCAGG CCACAGACAT GGCCGCGCTG CAAGCGCAGG TCACATCCGC CGAACGCGCC CGGACACTGG CCGATGCGGA GAACCGGGTG ATAGAGGCAC AGCGCGAGTG CAAGGATGCT GAGGCCGCGC TGTCTCTGGC AATGCAGATC CAGACATCGA CGCAGGCAAC GGCACAACAA GCGCAAGCTG CCTACCTTCA ACAAATACAA AGCAAAAGCG AAATAGAGGC GCTGCGCCGG ACAATCGATC AGATGGAACG CGATCGAGAT GTGCTGGAAA AAGCCACCGG CCTCACCGCA TCGGTCGAGG CGGCCAAACG ACGCGTGCAG GAGGAACAGG CCGCATTCCG AACCGCAGAG GCCGGTCTTG CCGAGCTGAC TGGCAAGCGG CAAGTCCGGG AACAGGCATT GAAACAGGCC CGCCTTGCCC ATGAGCGCAG GCAATCATTG ACCGCAAACC TTACGGCCTT GCAGGCGCAG GTGAAGCAGG CTGAGATTGT GGAACGGGCC GAAAAAGATC TGCAACAGGC CTACCAGCAG TTAAACCATA GTGCAAACAT CCATGCCGAA CGACAGGCTC AGACCACCAA GGCCGCAGCA CTGTTCGATC AGGCCGAACG TCGGCTTGCC TCCGCGCAGG CTCTCCATTT GGCAGCAAAG CTGGGGCCTG GTCTCCCCTG CCCTGTTTGT GGCGCAACCG ACCATCCGAC CCCTGCGATG GGGGACAGCG CCGAGGCCGG ATTGGACAAG GCCTTTCGCG AAGCGAAACA GGCGCTGGAA AAGGCGCGAT TGGAAGAGCA GCATAGCGCT ACCGCTCACG CCTCTGCGCA AGCCACCGTT GATGAACGCC AAGGTCGCCT AGGAGATCTG GAGCGGCCCG AGCAGCAGAT CCAGGAGTTG CGCCAGGACA TGGAAGGGAT GGAGCGTGCC CTTCGCGGGC TCGGCCCGGC CATCGATATC GCCGCTGCCG AAACCGCGCT GGAAAATCTT GGAAAAGCCA TCACCGATGC CCAAGCCCGG CTGGATCAGC ACCGGGATCG GCTGGCCGCG CTGAAGACCG AGACCAGCAA TGGTGAAACG CGACTTGCCG AAATGCTCTC CGGCATCGCA GCACATCTGC GGGATAAAGC AGCCCTGGAG CGCCAGCTTC AACAGTCGAA GGCCTTGATG ACAAGCCGGG AAACGGCATT GAAGCGCAGC GAAGAAGCCG CAACGGCAAC GCGCGAAGCG GCATTCAGCG CGCACAAAGA CAGCGAAGCC GCCGAAAACA TCCTGACCGA AAGACAAGCC CGCTTCGAAA AGGAAAATCA GGGTTTCGAG GATCGCCTGC GCGACGCTGG CCTGACGCGC GACGATCTGA ACCGCCTGAA ACCTGCAATC ATGACACTTG AGCGTGACAA AGCGACGATA GAGACCCACC AGCGCCAATT GCAGCGCGAC AGTGAAAAGC TCTTGGAATT GGAGACCGCG CTCACGGGTA AGCAGCCGCC GGACCTTCTC GCCCATCAAG AGGCGCTTGC GTCCGCTGAA GCCGCTTTCG ATACAGCCGT TACACTGCGC GCAGCAACGG CGGCTCGGCT CGATCACCTG CAAAACTTGC GCAAAGAGCT TGCCGGCATC GCCAAACGGC TTGACGAAGC CGAGGCAACC TCCGGCCCTC TGCGGGAGCT GGCTGGCCTG TTCGATGCCC AGAACCGGCA GAAACTGAAA CTGGAAACCT TCGCCATCGG CGCGATGTTC GAACAGGTCT TGCAAGCAGC CAACCTGCGG CTGGGACCGA TGACCAATGG CCGCTACAGG CTGGAACGTG ACATCGAATC CGGTGGCCGG GGTAAGCGTG GGCTGGGCAT TCTCGCCTTC GATGTCCATA CCGGCAAGGC AAGACCCACC GCGACACTTT CCGGTGGTGA AACCTTCATC GCCGCCCTGG CACTTGCCCT GGGTCTGGCC GACGTGGTCG AAAGCGCCAG CGGCAAGGTG CGCCTCGATA CGATTTTCCT CGATGAAGGC TTCGGCAGCC TTGATACGGA AAACGGCTCA GGCACACTTG ATCTGGTCTT GCAGGCTTTG AATAGCCTAG CCAGCCAGAA CCGCACTGTT GGACTGATAT CTCATGTTCC GCTTGTTCAG GAAGCAATTC CGAATGGTTT TTACGTCAGG AAGGACAGCG ATGGCAGCCA TGTGGAAGCT CGAGGAATGA TGTAA
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Protein sequence | MRPVRLVMQA FGPYAGRQSI DFREAVAAGL FGIYGQTGSG KSTIFSAMTF ALFGEAARAE QDTISLRSDH ASPDLATEVE FVFDLGARRY VIRRRPEQMR PKQRGGGETR DAHEAWLFDA TGLGESEITA AQPGKVLAEK KIGLVREKIT DLLGYGPEQF KQIVLLPQGR FEAFLAAKTQ ERQDILSALF DVSLYRRLAA KLKSDAESAE RLVREERAVC LRRLGADGFD SMQALMDGIA EAASSLTDRQ QAEQHLRAEA DAARASLQAA RDTDNQFKSM DAARQAKQKT LDQATDMAAL QAQVTSAERA RTLADAENRV IEAQRECKDA EAALSLAMQI QTSTQATAQQ AQAAYLQQIQ SKSEIEALRR TIDQMERDRD VLEKATGLTA SVEAAKRRVQ EEQAAFRTAE AGLAELTGKR QVREQALKQA RLAHERRQSL TANLTALQAQ VKQAEIVERA EKDLQQAYQQ LNHSANIHAE RQAQTTKAAA LFDQAERRLA SAQALHLAAK LGPGLPCPVC GATDHPTPAM GDSAEAGLDK AFREAKQALE KARLEEQHSA TAHASAQATV DERQGRLGDL ERPEQQIQEL RQDMEGMERA LRGLGPAIDI AAAETALENL GKAITDAQAR LDQHRDRLAA LKTETSNGET RLAEMLSGIA AHLRDKAALE RQLQQSKALM TSRETALKRS EEAATATREA AFSAHKDSEA AENILTERQA RFEKENQGFE DRLRDAGLTR DDLNRLKPAI MTLERDKATI ETHQRQLQRD SEKLLELETA LTGKQPPDLL AHQEALASAE AAFDTAVTLR AATAARLDHL QNLRKELAGI AKRLDEAEAT SGPLRELAGL FDAQNRQKLK LETFAIGAMF EQVLQAANLR LGPMTNGRYR LERDIESGGR GKRGLGILAF DVHTGKARPT ATLSGGETFI AALALALGLA DVVESASGKV RLDTIFLDEG FGSLDTENGS GTLDLVLQAL NSLASQNRTV GLISHVPLVQ EAIPNGFYVR KDSDGSHVEA RGMM
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