Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3922 |
Symbol | pbpC |
ID | 7387279 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3285117 |
End bp | 3287204 |
Gene Length | 2088 bp |
Protein Length | 695 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 643652663 |
Product | penicillin-binding protein |
Protein accession | YP_002550844 |
Protein GI | 222149887 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.731246 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATCCGGC GCAGCAAGAC ATTCAGCTTG GTGCTGCTGA CCTGCCTGCT TGTGGGCGGG GCGGTTTGGC ATGGGCTGAA CCGGCTGGAT GCGGCCTTCC CGCCGCCGCT TGATGCGATC AGCCCGAATT CGGCGGAACT TCTGGATGCC GATGGGCAAT TGCTGCGGGC CTTCACCACG CAGGAAGGCC GCTGGCGGCT GAAAACCGTG GCCGCCGATG TCGATCCTTT GCTGGTACGC ATGCTGGTCG CTTATGAGGA CCGGCGTTTC TATCAGCATT CCGGTGTCGA TGGGCTGGCG CTTGGTCGGG CGGCTCTTCA ACTCATCCGC CATGGCCGGA TCGTGTCAGG TGCCTCAACG CTGTCCATGC AGGTGGCAAG GCTGATCGAA CCTCGAAAAT CACGCTCCTT TCTGGCCAAG ACCCAGCAGG CATTGCGGGC CATCCAGATC GAGCACCGGT TGGACAAGGC CGCCATTCTC GATCTCTACC TGACGCATGC CCCCTATGGC GGCAATCTCG AAGGGGTGCG GGCCGCCTCG CTTGCCTATT TCGGCAAGGA GCCGAAACAT CTGACGCCTG CGCAAGCAGC ACTGCTTGTC GCCCTGCCGC AATTGCCGGA ACGGCGGCGG CCCGACCGCT TTGCCGATAA CGCCCTTGCC GCCCGCGACC GGGTGCTGGC CCGCATGGAA AAAGCCGGCA TTGTTTCTGC GCAGGACCGG CAATTGGCAA GCGCCGTGCC GATCCCGCAG ACAAGGCTGG AATTGCCGAT GCTCGCGGCC CATGTCGGCG ATGCCGAGCG ACGCAAGCGG CCAGAAAGCC TGACCTATCC GACCACACTC AAAAAAGACG CGCAGGCCGC GCTGGAAACC GTGGCGAGAC AAGCCGCCCA AAGACTTCCG CCAAAAGTTT CCGTGGCAAT CCTGGCCGCC GACATCCGCA CCGGCGAGAT CCTCGCCCGG GTCGGTTCCG CCGCCTATCT CGATGCCAGC CGCTCCGGCT GGATCGACAT GACGCGCATC AAGCGATCGC CGGGCTCGAC GCTGAAGCCG CTGATCTACG GCCTGGCTTT CGAGCAGGGC CTGATCGCCC AGGATACGGT GATCGAAGAC CGTCCCGCCG ATTTCGCCGG CTATCGGCCG AAAAATTTCG ACATGCATTA TCAGGGCGAC GTCACCATTC GCGATGCCCT GCAACTGTCG CTGAACGTGC CGGCGGTCCG CTTGCTGGAA GCGGTCGGCC CTTCGCAATT GCTTGCCCGG CTGAAACGAG CCGATATCAG GATCGATCTG CCCAAGGCAG AAACCCCGGG GCTGGCCATC GCGTTGGGCG GTGCCGGTAC GACGTTGAAG GATCTCGTCG GGCTTTATGC CGCCCTTGCC CGGCAAGGCA GCGCCATCCG ACTGCGCGAC TGCGCTATGC CCAGTGGCGC TCATGTTCAG CCCGGACGCC TGCTGGAACC GGCAGCGGCC TGGAACGTCA CCGATATCCT GTCCGGCGTC GCCCCGCCGC TTGGCGCGCT GACTGGTCGG ATCGCCTATA AAACCGGCAC CAGCTACGGC TACCGCGATG GCTGGTCTAT CGGTTATGAT GGCCGCACGG TGATTGGTGT GTGGATTGGC AGGGCGGATA ACAGTGCCAT TCCCGGCCTG ACCGGCTATG GCACCGCAGC CCCTGTTTTG TTTGAGGCTT TTGCCCGGTC CAAACTGCCG CAAGCCCCCC TGCCCCCGCC GCCGGAGGGC GCCTTGCGGA TCGCCAAGAG CGATCTGACA CCCGGCCTCA GGCGCTTCTC ACGCGACGCC AGCGGCTTGA TTGCCCTCAA TGCGCGCGAA AAACCGCCGA TGATCGTCTA TCCCCCGGAA GGCGCCCATG TGGAACTCGG CCGGACCGCC GATGGCGCGC AGCTCCCGCT GGTGCTGAAA CTTCAGGCGG GCCGCGCGCC CTTCCGCTGG CTGGCCAATG GACAGGCCTT GCCGGATCTC GCCCGCACCC GCACCACCCG CTGGACACCC GATGGCAATG GTTACTCGAC ACTAACGGTG ATCGATGCGA GCGGGCGTAG TGCCAGCGTT GGCATTTTCC TTCAATAA
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Protein sequence | MIRRSKTFSL VLLTCLLVGG AVWHGLNRLD AAFPPPLDAI SPNSAELLDA DGQLLRAFTT QEGRWRLKTV AADVDPLLVR MLVAYEDRRF YQHSGVDGLA LGRAALQLIR HGRIVSGAST LSMQVARLIE PRKSRSFLAK TQQALRAIQI EHRLDKAAIL DLYLTHAPYG GNLEGVRAAS LAYFGKEPKH LTPAQAALLV ALPQLPERRR PDRFADNALA ARDRVLARME KAGIVSAQDR QLASAVPIPQ TRLELPMLAA HVGDAERRKR PESLTYPTTL KKDAQAALET VARQAAQRLP PKVSVAILAA DIRTGEILAR VGSAAYLDAS RSGWIDMTRI KRSPGSTLKP LIYGLAFEQG LIAQDTVIED RPADFAGYRP KNFDMHYQGD VTIRDALQLS LNVPAVRLLE AVGPSQLLAR LKRADIRIDL PKAETPGLAI ALGGAGTTLK DLVGLYAALA RQGSAIRLRD CAMPSGAHVQ PGRLLEPAAA WNVTDILSGV APPLGALTGR IAYKTGTSYG YRDGWSIGYD GRTVIGVWIG RADNSAIPGL TGYGTAAPVL FEAFARSKLP QAPLPPPPEG ALRIAKSDLT PGLRRFSRDA SGLIALNARE KPPMIVYPPE GAHVELGRTA DGAQLPLVLK LQAGRAPFRW LANGQALPDL ARTRTTRWTP DGNGYSTLTV IDASGRSASV GIFLQ
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