| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3895 |
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| Symbol | kduD |
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| ID | 7388575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3255143 |
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| End bp | 3255889 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643652642 |
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| Product | 2-deoxy-D-gluconate 3-dehydrogenase |
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| Protein accession | YP_002550823 |
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| Protein GI | 222149866 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.589012 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCGATC TGTTCTCTCT TTCGGGCAAG ACAGCGCTGG TGACAGGCGC AAATACCGGC
ATCGGCCAGG CCATTGCCCT GTCGCTGGCC GGGGCTGGCG CCAGCGTGAT TTGCGCGGGC
CGTTCGCCGG TGACGGAAAC TGTCGAGCAG ATTACCAATG CTGGCGGCAA GGCGTCCGGC
CTTACCCTCG ACCTGTCAGA CCCGATGGCC GGCAGCGGCA TTTTCGAGGA TCTCGGCCCG
GTCGATATTC TCGTCAACAA TGCCGGTATC ATCCGCCGCG CCGATGCGGT GGATTTCACC
GAAGCCGATT GGGACGCGGT GATGGATGTC AACCTGAAGG CGGTATTCTT CCTCTGCCAG
GCCTTCGCCA AAGCCTTGTT TGCCCGCGAC GCAGGCGGCA AGATCGTCAA TATCGCCTCG
ATGCTGTCCT TCCAGGGCGG TATCCGCGTG CCATCCTATA CGGCGTCGAA AAGCGGTGTC
GCCGGGCTGA CCAAGCTGCT CGCCAACGAG TGGGCGGCAA AAGACATCAA TGTCAACGCC
ATTGCCCCCG GCTATATCGA AACCAACAAT ACCGAGGCGC TGCGCAATGA CGCGGCCCGC
AACAAGGCGA TCCTGGAGCG CATTCCGGCT GGTCGCTGGG GCAAGGCCGA AGACATTGGC
GGCGCTGCGG TGTTTCTTTC CTCAAGGGCA GCCAAATATA TCCATGGCGC CATTCTCAAT
GTCGATGGAG GCTGGCTTGC CCGCTGA
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| Protein sequence | MSDLFSLSGK TALVTGANTG IGQAIALSLA GAGASVICAG RSPVTETVEQ ITNAGGKASG
LTLDLSDPMA GSGIFEDLGP VDILVNNAGI IRRADAVDFT EADWDAVMDV NLKAVFFLCQ
AFAKALFARD AGGKIVNIAS MLSFQGGIRV PSYTASKSGV AGLTKLLANE WAAKDINVNA
IAPGYIETNN TEALRNDAAR NKAILERIPA GRWGKAEDIG GAAVFLSSRA AKYIHGAILN
VDGGWLAR
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