| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3888 |
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| Symbol | |
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| ID | 7388568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3247268 |
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| End bp | 3248920 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643652635 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002550816 |
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| Protein GI | 222149859 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.799639 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATGA CATTGACGCG CCGCAGGCTG ATGACGACGG CCAGTGCTGT TCTGGCATTG
GGCGTTGCGG GGGGCGTTAC GGGCGTGCCG CGCGCTTTTG CCGCCACGCC GAAAGATACC
CTGGTCGAGG CCTGGGCGTT TGACGATATC ATTACCATGG ACCCGGGCGA GGCTTTCGAA
ATCTCTGCCG CCGAAGTCAC CGGCAATACC TATGATACGC TGGTAAAGCT GAATATTGCC
GATACCTCGA CCGTGGCTCC CGGCATTGCG GAAAGCTGGA GTGCGTCTGA AGACGGCCTG
ACCTATACGT TCAAGATCAA GTCCGGCATC AAATTCGCGT CCGGCAACCC GATCACTGCG
GAAGATGTGG CCTATTCTTT TGAACGGGCC GTCAAGCTCA ACAAGAACCC GGCCTTCATC
CTCCAGCAAT TCGGCCTGAG TGGCGAGAAT GTCGCGGAAA ATGCCAAGGC AGTCGATGCC
TCGACCTTCC AGTTCAAGGT GGACAAGCCT TATGCGACCA GCTTCGTGCT GAACTGCCTG
ACCGCAACCG TCGGTGCCAT CGTTGACAAG AAACTGGTGC AGAGCCACGC GGCAGCGGTG
ACGGTTTCCA AGGATTATCC TTATGACACC GATTTCGGCA ACGGCTGGTT GAAGACCAAT
TACGCTGGTT CCGGTCCTTT CAAGCTGCGC GAATGGCGTG CCAATGAATT GGTCGTGATG
GAGCGCAATG ATAATTATTA TGGTGAAAAG GCTAAGCTTA AGCGGGTCAT CTACCGCTTC
CTGAAGGAAA GCTCAGGCCA ACGTCTGGCG CTGGAATCCG GTGACGTCGA TGTGGCGCGT
AATCTTTCGC CGACGGACTT TACCGCGATT GCCAATGCGA AAAATATCAA GACAGATTCT
GCCCAGAAGG GAACGGTCTA TTATCTCGGT CTCAACCAGA AAAACCAGTA TCTCTCCAAG
CCGGAAGTCC GCCAGGCCAT CAAATATCTT GTCGATTACG ATGCCATCGG CGCAACCCTC
ATCAAGGGTG TCGGCACCGT GCATGAATCC TTCCTGCCCA AGGGTATTCT TGGCTCGATC
GATGACCAGC CCTACAAGTT GAATGTTGCG AAAGCCAAGG AATTGCTGGA AAAGGCTGGC
CTCAAGGATG GCTTCAAAGT CACCATGGAT GTGCGCTCCA TCGAGCCGAT GACCAGCATT
GCCCAATCCA TGCAGCAAAC TTTCGCACAG GCGGGCATTA CGCTGGAACT CATCCAAGGA
GATGGTAAGC AGACGCTGAC CAAATACCGC GCCCGCAACC ATGACATCTA TATCGGGGAT
TGGGGTGCTG ATTATTGGGA CCCGCATTCC AATGCCGAAA CCTTTACCAG CAATCCTGAC
AATTCCGACA CGCCGAAATC CAAGACACTC GCCTGGCGCA ATGCCTGGGA TGTGCCTGAA
TTGACCAAGG AAACCAGCGA AGCGCTGTTG GAGCGGGACA CGCCGAAGCG CAAGGCGATG
TATGAAGACT TGCAGCGCAA GGTTCTGGCC GACGGTCCGT TTGTGATCAT CTATCAAAAA
ACGGAAATTG CCGGCTATAG GGCCAATGTT CAAAATTATA AGCTTGGCCC CACCTTCGAC
AGCAACCTCA AAAACTTGAT TTCCAAGGAT TGA
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| Protein sequence | MTMTLTRRRL MTTASAVLAL GVAGGVTGVP RAFAATPKDT LVEAWAFDDI ITMDPGEAFE
ISAAEVTGNT YDTLVKLNIA DTSTVAPGIA ESWSASEDGL TYTFKIKSGI KFASGNPITA
EDVAYSFERA VKLNKNPAFI LQQFGLSGEN VAENAKAVDA STFQFKVDKP YATSFVLNCL
TATVGAIVDK KLVQSHAAAV TVSKDYPYDT DFGNGWLKTN YAGSGPFKLR EWRANELVVM
ERNDNYYGEK AKLKRVIYRF LKESSGQRLA LESGDVDVAR NLSPTDFTAI ANAKNIKTDS
AQKGTVYYLG LNQKNQYLSK PEVRQAIKYL VDYDAIGATL IKGVGTVHES FLPKGILGSI
DDQPYKLNVA KAKELLEKAG LKDGFKVTMD VRSIEPMTSI AQSMQQTFAQ AGITLELIQG
DGKQTLTKYR ARNHDIYIGD WGADYWDPHS NAETFTSNPD NSDTPKSKTL AWRNAWDVPE
LTKETSEALL ERDTPKRKAM YEDLQRKVLA DGPFVIIYQK TEIAGYRANV QNYKLGPTFD
SNLKNLISKD
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