Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3886 |
Symbol | |
ID | 7388566 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 3245262 |
End bp | 3246167 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643652633 |
Product | ABC transporter membrane spanning protein (oligopeptide) |
Protein accession | YP_002550814 |
Protein GI | 222149857 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCCTTC GCGAGTGGCT GCTGTCGGAC CGGCCCCAAT CACGCCGGCA GGCCCGGCTT GGCCGCGCCT ATGTCATCTG GCGGCAGTTT TCGGCCAATC GGCTGGCGCT GCTGGGGCTT GGCATCATTA TCGCGCTCAT TCTGGTTGCT GCTTTTGCCA ATCTGCTCGC CACCCACAAT CCGGTGCAGG GCGATCTTGC CAATGCAAGG TTAATGGCGC CCGGTACCGG TGGTTTCTGG CTCGGCAGCG ACGATCAGGG CCGCGACATC TATTCGCGGC TGATCTACGG GTCGCGGCTG ACATTGATGG TGGTGGTGCT GGTAGCAATC ATTGCCGCAC CCATCGGTCT GCTGGTCGGC ACGGTGGCCG GTTATGCGGG CGGCTGGGTC GATGCGGTGC TGATGCGGTT GACCGATATT TTCCTGGCCT TTCCGAAGCT CGTTCTGGCT CTGGCGCTGG TCGCAGCCCT CGGCCCCGGC ATTGAAAACG CCATTCTGGC CATCGCCGTC ACCTCCTGGC CGCCTTATGC GCGCATCGCC CGGGCCGAAA CGCTGACGGT TCGCAATTCC GATTATATCT CTGCCGTCAA GCTGATGGGC GCTTCGCCCT TTCGCATCGT GCTGCGCCAT ATCATGCCGC TCTGTCTGTC CTCGCTGATT GTCCGCGTTA CGCTGGATAT GGCGGGTATT ATCCTGACGG CGGCCGGTCT CGGCTTTCTG GGCCTTGGCG CCCAGCCGCC CCTGCCGGAA TGGGGGGCGA TGATTGCCGA TGGCCGCCGT TTCATTCTCG ATCAATGGTG GGTTGCCGCC ATGCCGGGCT TTGCCATCCT GATCGTCAGC CTCGGCTTCA ACCTGCTGGG CGATGGCCTG CGCGATGCGC TGGACCCGAA GGAGGCCGGC CAATGA
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Protein sequence | MSLREWLLSD RPQSRRQARL GRAYVIWRQF SANRLALLGL GIIIALILVA AFANLLATHN PVQGDLANAR LMAPGTGGFW LGSDDQGRDI YSRLIYGSRL TLMVVVLVAI IAAPIGLLVG TVAGYAGGWV DAVLMRLTDI FLAFPKLVLA LALVAALGPG IENAILAIAV TSWPPYARIA RAETLTVRNS DYISAVKLMG ASPFRIVLRH IMPLCLSSLI VRVTLDMAGI ILTAAGLGFL GLGAQPPLPE WGAMIADGRR FILDQWWVAA MPGFAILIVS LGFNLLGDGL RDALDPKEAG Q
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