| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3874 |
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| Symbol | |
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| ID | 7388555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3230389 |
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| End bp | 3232146 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652622 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002550803 |
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| Protein GI | 222149846 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGATCAT CTCAACCAAA GCAGGACACG GCAACCATGA CGTATAACAG GCCCTTAAGG
GCGCTATCGG CAGCCGCCAT TTTCGCAGCG ACTGGCGCAT TTGTCAGCAC CCCTGCCATA
GCCGCACGCG GCACGGATGG CGACGTAAAG ATCCTGTTCT GGCAGGCCGT TTCCAACCTC
AATCCCTATC TGTCGGGCGG CAGCAAGGAA GTCTATGCCG CCTCGATGGT GATCGAGCCG
CTGGCCGGTT TCGACGAGCA GGGCAATCTG TTCACCCGGC TCGCCGCCGA AATCCCCACT
GTTGACAACG GGGGCATCGC CAAGGACATG ACCTCGATCA CCTGGAAATT GAAACCGGGT
CTGACCTGGT CGGACGGCGG GACCGTCAGC GCCGATGACG TGGTATTCAC CTGGAAATAT
TGCATGGCGC CCGGCGGCGG CTGCGCCCAG GCGGCCAAGT TCGACGGGGT GAAATCGGTG
GAGGCCATCG ACCCGCTGAC CGTGAAAGTG ACGTTTGACG CCCCCAAGCC CTTTGCCTAC
AGCGCCTTTG TCGGCCAACT CTCGCCAATT ATCCAGCAAT CCCAGTTCAA GGACTGCCTG
GGCGAGAAAG CCCCACAATG CACCGAGGCC AATTTCAAGC CGCACGGCAC CGGACCCTTC
GTCGTCCGGG ATTTCAAAGC CAATGACGTC GTGCTGTTTG ACGCCAACCC GCGCTACCGC
GATCCGGCCA AGCCAGCTTT TGCGAGCATC ACCCTGAAAG GTGGCGGCGA TGCGATGTCG
GCGGCCCGCG CCGTGCTGGA AACCGGTGAA TATGATTTTG CCTGGAATAC GGTGGTGGAA
CCTGAAGTGA CGGAATCCAT GCTGAAAGCT GGCAAGGGCA CCATGACCTC GGCCTTCAGC
TCCACGGTCG AGCGCATTCA ACTGAACCCC TATGCCGTCG ATGCGGCCCT CGGTGCCAAA
CGCTCCACCA AAGAGGCCGG TCCGCATCCA GCCCTATCAG ACCCTAGAGT ACGCCGGGCG
CTGGCGCTCG CCATCGACCG CGATGTGATC GTTGAGGCAG GCTATGGCGC TGCCGGCCAG
CCGACCTGTA ACATCATCCC GGCCCCGGAT ATTTTCGCCT CCAAGGCCAA GACGTGGTGC
GGAAAGCAGG ACCTGGACGG AGCCAACACG CTGCTGGACG AAGCAGGCTG GAAAAAAGGC
CCCGATGGCG TCCGCGTAAA GGACGGCCGA AAACTGTCCT TTCTGTTCCT GACCACCACC
AATTCGGTGC GCCAGGGCAC GCAGGTTCTG GTCAAGGACA TGTGGTCACA GATCGGGGTC
GAAACCGAAT TGCGCAATGT CTCCGCTTCG GTGTTCTTCG GCGGCGATCC AGCCAGCCCT
GACACTTACC AGAAGTTCTA TGCCGACGTG CAAATGTATG CCAGCGGCTT TGAAAGCACC
GATCCTGAGA AATTCATGGG TGGTTTCACC TGTGAAAAGA TCCCCACTCC CGCTAATAAC
TGGCAGGGTG AGAACATCGC CCGCTACTGC GATCCGGCCT ATGACACGCT GCTGAGCGAG
CTACGCAGGA CCTCCGGCAC CGAAAAACGC GCCGAACTGG TCCGCACATT GAATGACATG
ATCGTCAATG ACGGCCTGGT CATTCCGCTG GTCAATCGCG GCGAGCCCTC GGCCATCTCG
AACACGCTGA AGGGTGCAAA ACTCAATCCC TGGGATTCAC AGTTGTGGAA TGTTGCGGAC
TGGACCCGTA GCAAGTAA
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| Protein sequence | MRSSQPKQDT ATMTYNRPLR ALSAAAIFAA TGAFVSTPAI AARGTDGDVK ILFWQAVSNL
NPYLSGGSKE VYAASMVIEP LAGFDEQGNL FTRLAAEIPT VDNGGIAKDM TSITWKLKPG
LTWSDGGTVS ADDVVFTWKY CMAPGGGCAQ AAKFDGVKSV EAIDPLTVKV TFDAPKPFAY
SAFVGQLSPI IQQSQFKDCL GEKAPQCTEA NFKPHGTGPF VVRDFKANDV VLFDANPRYR
DPAKPAFASI TLKGGGDAMS AARAVLETGE YDFAWNTVVE PEVTESMLKA GKGTMTSAFS
STVERIQLNP YAVDAALGAK RSTKEAGPHP ALSDPRVRRA LALAIDRDVI VEAGYGAAGQ
PTCNIIPAPD IFASKAKTWC GKQDLDGANT LLDEAGWKKG PDGVRVKDGR KLSFLFLTTT
NSVRQGTQVL VKDMWSQIGV ETELRNVSAS VFFGGDPASP DTYQKFYADV QMYASGFEST
DPEKFMGGFT CEKIPTPANN WQGENIARYC DPAYDTLLSE LRRTSGTEKR AELVRTLNDM
IVNDGLVIPL VNRGEPSAIS NTLKGAKLNP WDSQLWNVAD WTRSK
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