| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3863 |
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| Symbol | |
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| ID | 7388546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3210491 |
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| End bp | 3212701 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643652613 |
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| Product | ABC transporter nucleotide binding/ATPase protein |
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| Protein accession | YP_002550794 |
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| Protein GI | 222149837 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.779093 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCTG AAGACAGAGA TCTGGCGGAT GAGGGGCAGG CCAGATCCGC TCTTGCTGCA
TTGGCTCTTG CCACGCAAAA ATTGGGCTTA TCCCTCTCGG TCGAGCAATT GTGCCGCGAT
TACGGCGATG AGGAATGCTT TTCGCTGCCG CAACTGGCCG AAATCATCGG CGATCATGGG
GTAAAGGCCA AGCCGATCCG CATGAACTGG AAGCTGTTGA GCCAGATGGA AGGTGCTGTC
GCCGCCGTCA TTCAGCTCAA TGATGGGTCG CTCCTTGTCT TTGAAAACTT TGTCGATGAT
CCGCAGACGC CGCGCATGGT GTTTCGTGAT CCCGCCGATT CGAAAGCCGC CCGGTTTGTG
GTCGATGAAT TGCGGCTGAT GGAAAACTGG AGCGGCCATG TCCTGCTGAT GAAGCGGGAG
ATGACCGAGG CAAGTGCGCG TGAGGAATTT GGCTTTCACT GGCTGCTGGC CCAGGTGATG
CAGGACCGTC GCATGGTGCG CGACGTGTTC ATTTCGGCCA TTTCGCTGGG TATTCTGGCG
CTGGTGCCCT CGCTGTTCTA CATGGTGGTG ATCGACAAGG TCATGGTGCA TCACCGTTTG
TCGACGCTGA CGCTGATGGC TGCGGCCATT CTGGTCGTGC TGCTGTTCGA TATGCTGCTC
GGTTATATGC GCCGGACTGT GACCGCCATC GTCACCGCCA AGATTGACGT GCGGCTGAAC
CTGATGATCT TTGACCGGCT GTCGCGTCTT CCCATCGAAT TCTTCGAGCA GAATGCCACC
GGTGGCATCG TCCATCGGCT GGGCGAAGCC CGTCGGCTGA GGGCTTTCGT CACCGGCCAA
TTGTTCGGTT CGGTGCTGGA TATGCTGTCG CTGTTCGTGC TCATTCCTGT CATGTTCCTG
CTCAGCCCCG GCCTGACCTT CTGGGTCCTG GGCCTCGGCG CGATGATGAG CCTGATACTG
TTTATCTATA TGAAGCCGAT TCGCCGCGCC TATGCGCAGG TGATGGGCAG CGAACACCGC
CGCACCGCCA TGCTGATCGA GATGATCAAC GGCATCCGCA CGGTGAAATC TCTGGCACTT
GAAGGCCGCA AGCGGCGCGA ATGGGACCAG AAAGTCGCCG AAGCGGTCAA TAACCAGACC
AACCTGCTGT TTCTGGCCAA CCAGCCGCAG ACCTTGCTGG CCCCTTTGGA AAAGCTGATC
TATGCGGGCT CGCTGTTGAT CGGCGCCTAT CTGGTCATCG TCAACGAGCA TACGGTCATG
ACCGGAACGC TGGTGGCCTT TACCATGATT GCCATGCGCG CCACCCAGCC GCTGGTGCAG
ATGGCTGGCA TGATGCAGCA GATGGAAGAG GCGCGCGGTG CATTGCGCCA GGTCGCATCC
GTCATCAATG CCGAGCCGGA ACCGCGCCGT GAACACGGGG TACGCCCGGA ATTTTCCGGC
CGGATCAGCT TCGAGGATGT CCGTTTTGCC TATGCAGGTA CCGCGGTGCC GGCGCTCAAC
GCCATCAATT TTCACGTCAA GCCGGGCAAT ATCGTCGGGC TGATGGGCCG TAGCGGCTCG
GGCAAGACCA CGGTGACGCG GCTGTTGCAG GGCCTGCATC AGAGCTATTC GGGGCTGATC
CGTCTCGATG GCGTCGAGCT GAAGGAAGTC GATCTCTATC ATCTGCGCAC CAATGTCGGC
GTCGTGCTTC AGGAAAGCTT TCTGTTTCGT GGCACGATCC GTGACAATAT CCTGATCGCC
AAGCCGGATG CCTCGCCTGA GGAAATGATC GAGGCGGCAC AACTGGCCGG TGCTGATGAA
TTTATCGAAC GTCTGCCGCG CGGCTATGAC ACGATGCTGG AAGAACATGC CAGCAATCTC
TCCGGCGGCC AGAAGCAGCG GTTGGCAATT GCCCGGGCGC TGATCGTCAA CCCGCCCATT
CTGATCTTCG ACGAGGCCAC CAGCGCGCTC GATCCGGAAA GCGAAGCGAT CATCTTGCGC
AACCTGAAGC GCATTGCCGA AGGCCGCACC GTGCTGATGA TTTCGCACCG TCTGTCCTCG
CTTGTCGATT GCGACCAGAT CCTGGTTCTG GATCGCGGCC AGTTGAAGGA CAGCGGCACC
CATCACGACC TGCTGCGCCG CTCCGGCGAC TACCGCCACC TCTGGAACCA GCAGAACCGC
CACCTGACGA CGGGAAAAGA TCATGACGAA AACCTTGACG CTGTCGCCTG A
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| Protein sequence | MNAEDRDLAD EGQARSALAA LALATQKLGL SLSVEQLCRD YGDEECFSLP QLAEIIGDHG
VKAKPIRMNW KLLSQMEGAV AAVIQLNDGS LLVFENFVDD PQTPRMVFRD PADSKAARFV
VDELRLMENW SGHVLLMKRE MTEASAREEF GFHWLLAQVM QDRRMVRDVF ISAISLGILA
LVPSLFYMVV IDKVMVHHRL STLTLMAAAI LVVLLFDMLL GYMRRTVTAI VTAKIDVRLN
LMIFDRLSRL PIEFFEQNAT GGIVHRLGEA RRLRAFVTGQ LFGSVLDMLS LFVLIPVMFL
LSPGLTFWVL GLGAMMSLIL FIYMKPIRRA YAQVMGSEHR RTAMLIEMIN GIRTVKSLAL
EGRKRREWDQ KVAEAVNNQT NLLFLANQPQ TLLAPLEKLI YAGSLLIGAY LVIVNEHTVM
TGTLVAFTMI AMRATQPLVQ MAGMMQQMEE ARGALRQVAS VINAEPEPRR EHGVRPEFSG
RISFEDVRFA YAGTAVPALN AINFHVKPGN IVGLMGRSGS GKTTVTRLLQ GLHQSYSGLI
RLDGVELKEV DLYHLRTNVG VVLQESFLFR GTIRDNILIA KPDASPEEMI EAAQLAGADE
FIERLPRGYD TMLEEHASNL SGGQKQRLAI ARALIVNPPI LIFDEATSAL DPESEAIILR
NLKRIAEGRT VLMISHRLSS LVDCDQILVL DRGQLKDSGT HHDLLRRSGD YRHLWNQQNR
HLTTGKDHDE NLDAVA
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