Gene Avi_3858 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3858 
SymbolgltX 
ID7388542 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp3204019 
End bp3205473 
Gene Length1455 bp 
Protein Length484 aa 
Translation table11 
GC content60% 
IMG OID643652609 
Productglutamyl-tRNA synthetase 
Protein accessionYP_002550790 
Protein GI222149833 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0008] Glutamyl- and glutaminyl-tRNA synthetases 
TIGRFAM ID[TIGR00464] glutamyl-tRNA synthetase, bacterial family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.131091 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCACTT CCGGCGTCCG CGTCCGTATC GCTCCTTCTC CCACCGGTGA ACCGCATGTC 
GGCACAGCCT ATATCGCGCT GTTCAACTAT CTGTTCGCAA AGAAACACGG CGGTGAATTC
ATTCTGCGCA TCGAGGATAC CGATGCGACC CGCTCGACGG CGGAATTTGA GCAGAAGGTG
CTGGACGCGT TGAAATGGAC CGGCCTGACC TGGGCCGAAG GCCCGGATGT TGGCGGTCCC
TACGGTCCCT ACCGCCAGTC CGAGCGCAAG GACACCTATC GTCCGTTCGT CGACAAGATG
GTGACTGAGG GCAATGCGTT CCGCTGTTTC TGCACGCCCG CCCGGCTGGA CCAGATGCGC
GAAGCGCAGC GCGCAGCGGG CAAGCCGCCC GGCTATGACG GTCTCTGCTT GCATTTGAAG
GCGGAAGAAG TCGATGCGCG CGTTGCCGCA GGCGAGCCGC ATGTCGTGCG CCTGAAAATC
CCAACCGAAG GCTCCTGCGA TTTCCATGAC GGCGTTTATG GCGACGTGTC GATCCCGTGG
GAAAGCGTCG ATATGCAGGT TCTGCTGAAA GCAGACGGCA TGCCGACCTA TCACATGGCC
AATGTGGTTG ATGACCACCT GATGAAGATC ACCCATGTGG CGCGCGGCGA GGAATGGCTG
GCCTCCGTGC CGAAGCATAT CCTGATCTAC AAATATCTCG GTCTTGAGCC GCCGGTGTTC
ATGCATCTCA GCCTGATGCG CAATGCCGAC AAATCCAAGT TGTCGAAGCG CAAGAACCCG
ACCTCTATTT CTTATTATTC GGCCCTCGGC TACCTGCCCG AAGCGCTGAT GAATTTCCTT
GGCCTGTTCT TCATGCAGAT CGCCGAAGGC GAAGAGCTGT TGACGATGGA CGAGCTGATC
GCCAAGTTCG ACCCCGACAA TCTCTCCAAG GCGGGTGCTA TCTTCGACAT CCAGAAGCTC
GACTGGCTGA ACGGTCGCTG GCTGCGCGAA AAGCTGACGC CGGACGAATT CCTGGGCCGC
GTTCTGACCT GGGCCAGCGA AAACGACAGG CTGACGGAAG GCCTGAAGCT CGCTCAGAGC
CGGATCACCA AGCTTGGCGA ATTGCCGCCG CTGGCAGGCT TCCTGCTGGC CAATGATGTC
GGCCTGACGC CTGCTTCCTT CGGCGGGTTG AAAACCAGCC CGGCGGAAAC GCTTGAGATC
GTCACCACCG TTCAAGCCGA TCTCGAAAAG ATCCTCGAAT GGAATGTTGC GACCATCGAG
GAAGAACTGC GGGCCATTGC CGACCGGTTG GGCAAGAAGC TGCGCGTCGT CACCCCGCCG
TTGTTCGTTG CCGTTTCCGG CAGCCAGCGT TCTCTGCCGC TGTTTGACAG CATGGCGCTG
CTGGGCCGTT CCGTGGTGCG CCAGCGCCTC AAGGTGGCCA TTCAGGTCTT GACCTCCATG
GCTGGCGCGG CCTGA
 
Protein sequence
MTTSGVRVRI APSPTGEPHV GTAYIALFNY LFAKKHGGEF ILRIEDTDAT RSTAEFEQKV 
LDALKWTGLT WAEGPDVGGP YGPYRQSERK DTYRPFVDKM VTEGNAFRCF CTPARLDQMR
EAQRAAGKPP GYDGLCLHLK AEEVDARVAA GEPHVVRLKI PTEGSCDFHD GVYGDVSIPW
ESVDMQVLLK ADGMPTYHMA NVVDDHLMKI THVARGEEWL ASVPKHILIY KYLGLEPPVF
MHLSLMRNAD KSKLSKRKNP TSISYYSALG YLPEALMNFL GLFFMQIAEG EELLTMDELI
AKFDPDNLSK AGAIFDIQKL DWLNGRWLRE KLTPDEFLGR VLTWASENDR LTEGLKLAQS
RITKLGELPP LAGFLLANDV GLTPASFGGL KTSPAETLEI VTTVQADLEK ILEWNVATIE
EELRAIADRL GKKLRVVTPP LFVAVSGSQR SLPLFDSMAL LGRSVVRQRL KVAIQVLTSM
AGAA