Gene Avi_3838 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3838 
Symbol 
ID7388528 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp3190215 
End bp3190907 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content58% 
IMG OID643652595 
Producttranscriptional regulator TetR family 
Protein accessionYP_002550776 
Protein GI222149819 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.606304 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGTCG TCGACGATGA AAAACCCGCC CAGGCCGCTT CAGGACGTTT CGCCGCAGGT 
GAAGATCCGG CCAAGCGCGA CCAGATCCTG GATGGCGCCA AACGCGCCTT CATGAAGCAT 
GGCTTCGATG CGGCCAGCAT GAACGATGTC ACCCGGGAAG CCGGCGTGTC CAAGGGGACC 
ATCTATGTCT ATTTCCAGAG CAAGGAAGAT CTGTTTGCCG CGCTGATCAA CAACCAGAAG 
CAGAAATTTG CGGCCTCAAT GCGCGATATC CTGGCGGAAG AGACCGATCT GCATATGGCG 
CTGCGCCGCT ATGCCCTGGC TTTTACCAAT TATATTCTCA CCAGCGAAAT GATCCCTGCC 
ATGCGCATGC TGCTGGCGGT TCAGGATCGC ATGCCGCACC TCTGTCAAAG CTTCATGCGG 
TCGGGACCGG AAAACGTCCG CACGGTTCTC GAGGACTATC TGGAGGTCCA GGTGAAGGCC 
GGACGTCTCG ACATAGCCGA TACCGAGCTT GCCGCCCGCC AGTACATCGA GCTGGCAACA 
GGCGCCTATT TCAAGAAGCG ACTGTTCGGT GAAATCGAAG TGCCGCCGCC GCAGGCGGAA 
ATTGACTACA TCATCGATAA CGCCCTGCAT ATTTTCCTGC TCGCCTATGA TCGCAAGGCC 
GAAAACGGCC CTGAGGCGCA ACGGGCGAAC TGA
 
Protein sequence
MTVVDDEKPA QAASGRFAAG EDPAKRDQIL DGAKRAFMKH GFDAASMNDV TREAGVSKGT 
IYVYFQSKED LFAALINNQK QKFAASMRDI LAEETDLHMA LRRYALAFTN YILTSEMIPA 
MRMLLAVQDR MPHLCQSFMR SGPENVRTVL EDYLEVQVKA GRLDIADTEL AARQYIELAT 
GAYFKKRLFG EIEVPPPQAE IDYIIDNALH IFLLAYDRKA ENGPEAQRAN