| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3806 |
|---|
| Symbol | speF |
|---|
| ID | 7388255 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3165600 |
|---|
| End bp | 3166733 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643652571 |
|---|
| Product | ornithine decarboxylase |
|---|
| Protein accession | YP_002550752 |
|---|
| Protein GI | 222149795 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.16357 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCG CCCGCATCCT CGACTTCATC AATACCCAGC GTCCTGAAGG CCCTTGCCTC
GTCGTGGACC TTGATGTCGT GCGCGATAAT TATGGCGCAT TCCGCCACGC CCTGCCAGAC
AGCGCCATCT ACTATGCCGT CAAGGCAAAC CCGGAGCCGG CAATCCTGTC GCTGCTCGCA
TCGCTCGGCT CCAACTTCGA TTGCGCCTCC GTGGCCGAAA TCGAAATGGC GCTTGCTGCC
GGTGCGACCG CCCAGCGGAT TTCGTTTGGC AACACCATCA AGAAGGAACG GGATATTGCC
AAGGCGCATG CGCTCGGCAT CAACCTGTTT GCCGTCGATA GCCATGAGGA AGTCGAAAAG
ATTGCCCGTG CCGCCCCTGG CGCCCGTGTG TTCTGCCGCG TCCTCACCGA TGGTGAGGGT
GCCGAATGGC CTTTGTCGCG CAAGTTCGGC TGCGTGCCGC AGATGGCCGT CGACGTTCTG
GTCTATGCCC ACCAGCATGG CCTGGAAAGC TTCGGCGTGT CCTTCCATGT CGGCTCGCAG
ATGACCAAGG TCGATGCCTG GGATGCAGCA CTGGGCGATG CCAAGCGGGT GTTCGCACAG
CTGGCCAAGC AGGGCATCTA CCTGCAAATG GTCAACATGG GCGGTGGTTT TCCGACCAAG
TACCTGCGCG ACATTCCGTC TGCTGAAGCC TATGGCCAGG CCATCAACGC ATCGCTGAAG
AAGCATTTCG GCAACAACAT TCCGCAGACC ATCATTGAGC CCGGTCGCGG CATGGTTGGC
AATGCCGGTG TGATCAAGGC GGAAGTGGTG CTGATCTCGA AGAAGTCCGA CAATGACGCC
CATCGCTGGG TGTTCCTTGA TATCGGCAAG TTCGGCGGTC TGGCGGAAAC CATGGACGAG
GCGATCCGTT ACCCGATCCG CACGGCCCAT GACGGCGACG AAATGGAGCC TTGCGTGTTG
GCTGGCCCGA CCTGCGACAG CGCCGATGTC ATGTATGAAA AGAACATGTA TCCGCTGCCG
CTGTCGCTGA CCATCGGCGA TGACGTGCTG ATCGAAGGCA CCGGTGCCTA TACCACCACC
TATTCGGCGG TGGCGTTCAA CGGTTTCGAA CCGCTGAAAG CCTATGTGAT CTGA
|
|---|
| Protein sequence | MTTARILDFI NTQRPEGPCL VVDLDVVRDN YGAFRHALPD SAIYYAVKAN PEPAILSLLA
SLGSNFDCAS VAEIEMALAA GATAQRISFG NTIKKERDIA KAHALGINLF AVDSHEEVEK
IARAAPGARV FCRVLTDGEG AEWPLSRKFG CVPQMAVDVL VYAHQHGLES FGVSFHVGSQ
MTKVDAWDAA LGDAKRVFAQ LAKQGIYLQM VNMGGGFPTK YLRDIPSAEA YGQAINASLK
KHFGNNIPQT IIEPGRGMVG NAGVIKAEVV LISKKSDNDA HRWVFLDIGK FGGLAETMDE
AIRYPIRTAH DGDEMEPCVL AGPTCDSADV MYEKNMYPLP LSLTIGDDVL IEGTGAYTTT
YSAVAFNGFE PLKAYVI
|
|---|
| |