Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3789 |
Symbol | |
ID | 7388242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 3150428 |
End bp | 3151534 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643652558 |
Product | periplasmic mannitol-binding protein |
Protein accession | YP_002550739 |
Protein GI | 222149782 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGATCGTC GTGGATTTTT GAAGAAGGCC GGTGTCGCAG GCGTCGGTTC GCTTGGAGCG GTTGGGCTGG CCGCACCCGC CATTGCCCAG CAGGCACCGA AAATCAGTTG GCGACTGACC TCGTCCTTCC CGAAATCGCT GGACACGATT TATGGTGGTG CTGAGGATAT TGCGGCCCGC GTGGCGGCGG CAACCGATGG CAATTTCACC ATCCAGGTGT TTGCGGCAGG TGAAGTGGTG CCGGGCTTGC AGGCCGCCGA TGCGGTTGGC GCTGGCACGG TGGAAATGTG CCATACCTGC TCCTATTACT ATGTCGGCAA GGACCCGACC TTTGCGATTG GCACCGCCAT TCCCTTCGGG CTGAATGCGC GCCTCACCAA TGCCTGGTTC TATCAGGGCA ATGGCAATAC GCTGCTCAAC GAATTCTACG CCAAGCACAA TCTCTATGGC ATGGTGGCTG GCAATACCGG CGCGCAGATG GGCGGCTGGT TCCGCCGCGA AATCAACACC GTCGATGACC TCAAGGGCGT GAAAATGCGC ATTGCCGGCT TGGCTGGCAA GGTCATTGAA AAGCTGGGCG GCGTGCCGCA GCAGATTGCT GGCGGCGATA TCTATCCGGC GCTGGAAAAA GGCACCATCG ACGCCGCCGA ATGGATCGGC CCCTATGACG ACCACAAGCT CGGCTTCTAC AAGGTCGCCA AATATTACTA CTACCCCGCC TTCTGGGAGG GTGGCCCGGC CATCCACGCC TTCGTTAATC TCGCCAAATG GAACGAACTG CCGAAATCCT ACCAGACCGT GTTGCAGGAC GCCTGCGCCT TCGCCAATAC CAATATGATG GCGAAATACG ACCTGAAAAA CCCTGTTGCG ATCAAGCAGA TCGTCTCGGA AGGCACCACG CTGAAACCCT TCAGCCAGGA CATTCTCGAC GCCTGCTTCA AAGCGTCCAT GGAAGTCTAC GCCGAAATCT CCGCCAAGAA CCCGGATTTC AAGAAAGTCT ACGACGACCA GGTCGCCTTC AAGAAGGAAG CCTATCTGTG GATGCAGCTG GCAGAATACA CCTATGATAC GTTCATGATG ATTCAGCAGC GCGGGGGTAA GCTATAA
|
Protein sequence | MDRRGFLKKA GVAGVGSLGA VGLAAPAIAQ QAPKISWRLT SSFPKSLDTI YGGAEDIAAR VAAATDGNFT IQVFAAGEVV PGLQAADAVG AGTVEMCHTC SYYYVGKDPT FAIGTAIPFG LNARLTNAWF YQGNGNTLLN EFYAKHNLYG MVAGNTGAQM GGWFRREINT VDDLKGVKMR IAGLAGKVIE KLGGVPQQIA GGDIYPALEK GTIDAAEWIG PYDDHKLGFY KVAKYYYYPA FWEGGPAIHA FVNLAKWNEL PKSYQTVLQD ACAFANTNMM AKYDLKNPVA IKQIVSEGTT LKPFSQDILD ACFKASMEVY AEISAKNPDF KKVYDDQVAF KKEAYLWMQL AEYTYDTFMM IQQRGGKL
|
| |