| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3717 |
|---|
| Symbol | exsC |
|---|
| ID | 7388188 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3082823 |
|---|
| End bp | 3083179 |
|---|
| Gene Length | 357 bp |
|---|
| Protein Length | 118 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643652503 |
|---|
| Product | 6-pyruvoyl tetrahydropterin synthase |
|---|
| Protein accession | YP_002550685 |
|---|
| Protein GI | 222149728 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0720] 6-pyruvoyl-tetrahydropterin synthase |
|---|
| TIGRFAM ID | [TIGR00039] 6-pyruvoyl tetrahydropterin synthase/QueD family protein
[TIGR03367] queuosine biosynthesis protein QueD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.190137 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACCGGA TCACCAAGGA ATTTCATTTT TCCGCCTCGC ACCAGCTGAA AGGCCTGCCC
GACGATCATC AATGCGCCCG GCTGCATGGG CATAATTACA TTGTCCTGGT CGAATTGTCG
GGCGAGGAGT TGAATGAGTA CGGGTTCCTG CGCGACTATC ATGAGCTGAA AGTGCTGAAG
GCCTATATCG ATGAGGCCTT CGATCACCGC CATCTCAATG ATGTCCTGGG TCATGACAAG
ACCACGGCAG AATGCCTGGC CAAGCATTTC TATGACTGGT GCAAGCAGCA TTTTGCCGAG
ACCTCTGCAG TGCGGGTCAG CGAAACCCAG AAGACCTGGG CGGAGTATCG TCCTTGA
|
|---|
| Protein sequence | MYRITKEFHF SASHQLKGLP DDHQCARLHG HNYIVLVELS GEELNEYGFL RDYHELKVLK
AYIDEAFDHR HLNDVLGHDK TTAECLAKHF YDWCKQHFAE TSAVRVSETQ KTWAEYRP
|
|---|
| |