Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3707 |
Symbol | |
ID | 7388180 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3071611 |
End bp | 3073053 |
Gene Length | 1443 bp |
Protein Length | 480 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643652495 |
Product | homospermidine synthase |
Protein accession | YP_002550677 |
Protein GI | 222149720 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG5310] Homospermidine synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.134775 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCACCC AGACCTATCC GGTTTACGGC GAGATCACCG GTCCGATCGT GATGATCGGC TTCGGTTCGA TCGGCCGGGG CACCCTGCCG CTGATCGAAC GCCACTTCAA GTTCGACAAG AGCCGGATGG TGGTCATCGA CCCCCGCAAT GACGAGGCCG AATTGATGGC CAAGCATGGC ATCAAGCACA TCCAGGCGCA TGTCACCAAG GAGAACTACA AGGACCTGCT GAAGCCGCTG CTGACAGAAG GCGAAGGCCA GGGCTTCTGC GTCAACCTGT CGGTCGATAC CGGCTCGCTC GACCTGATGA AGCTGTGCCG CAAGCTGGAC GTGCTCTATA TCGATACGGT GGTTGAGCCT TGGCTGGGCT TCTATTTCGA CAAGAACATG AAGAACTCAG AGCGCACCAA CTATGCACTG CGCGAAACCG TTCGCCAGGA AAAGAACAAG AACCCCGGCG GCACCACCGC CGTCTCCACC TGCGGCGCCA ATCCGGGCAT GGTCTCCTGG TTCGTCAAGC AGGCGCTGGT GAATATAGCC AATGAAATCG GCCTGAAATT CGAAGAGCCA GCCGTCGGTG ACCGCGAAGG CTGGGCCAAG CTGATGAAGA AGGTCGGCGT CAAGGGCATT CACATTGCCG AGCGCGACAC GCAGCTGGCC AAGACACCGA AGCCGCTCAA CGTGTTCTGG AACACCTGGT CGGTCGAAGG CTTTATTTCG GAAGGCTTGC AGCCAGCCGA ACTCGGCTGG GGCACTCATG AAAACTGGAT GCCGAAAAAC GCCAAGAAGC ACAAGAAGGG CTGCAAGGCA GCGATCTATC TGGAGCAGCC TGGCGCCAAT ACCCGCGTGC GCACCTGGTG CCCGACGCCC GGCCCGCAAT ACGGCTTCCT CGTCACCCAC AACGAATCGA TCTCGATTGC CGATTACTTC ACCGTCGAGA AGGATGGCGA GGTCGCCTAT CGTCCGACTT GCCATTACGC CTATCATCCG GCCAATGATG CCGTTCTGTC GCTGCATGAA ATGTTCGGCA ATGGCGGTAC CGCCCAGCCG GTCCTGCATG TTCTCGACGA AAACGAACTG GTCGATGGCA TCGACGAGTT GGGCGTGCTG CTCTACGGCC ACGAAAAGAA CGCCTACTGG TATGGTTCGC GCCTGTCGCT GGAAGAAACC CGCCGCATCG CCCCCTACCA GAACGCCACC GGTCTCCAGG TAACGTCCGC AGTGCTGGCC GGCATGGTCT GGGCCATCGA GAACCCGAAG GCTGGGATCG TCGAGGCCGA CGAAGTTGAT TACAAGCGCT GCCTGGAAGT GCAGTCGCCC TATCTCGGCC CGGTCGAAGG CCATTACACC GACTGGACCC CGCTCGACGG TCGCCCCGGC CTGTTCCCGG AAGACCTCGA CACCAAGGAC GCGTGGCAGT TCAAGAATAT CCTGGTGCGC TAA
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Protein sequence | MTTQTYPVYG EITGPIVMIG FGSIGRGTLP LIERHFKFDK SRMVVIDPRN DEAELMAKHG IKHIQAHVTK ENYKDLLKPL LTEGEGQGFC VNLSVDTGSL DLMKLCRKLD VLYIDTVVEP WLGFYFDKNM KNSERTNYAL RETVRQEKNK NPGGTTAVST CGANPGMVSW FVKQALVNIA NEIGLKFEEP AVGDREGWAK LMKKVGVKGI HIAERDTQLA KTPKPLNVFW NTWSVEGFIS EGLQPAELGW GTHENWMPKN AKKHKKGCKA AIYLEQPGAN TRVRTWCPTP GPQYGFLVTH NESISIADYF TVEKDGEVAY RPTCHYAYHP ANDAVLSLHE MFGNGGTAQP VLHVLDENEL VDGIDELGVL LYGHEKNAYW YGSRLSLEET RRIAPYQNAT GLQVTSAVLA GMVWAIENPK AGIVEADEVD YKRCLEVQSP YLGPVEGHYT DWTPLDGRPG LFPEDLDTKD AWQFKNILVR
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