Gene Avi_3667 details

Gene Information

• Locus tag: Avi_3667
• ID: 7388070
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3040811
• End bp: 3042637
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643652467
• Product: ABC transporter nucleotide binding/ATPase protein
• Protein accession: YP_002550649
• Protein GI: 222149692
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components
• TIGRFAM ID: [TIGR02204] ABC transporter, permease/ATP-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGGGG CGGAGTACGG ATCAGTGTCG GAAAACCAAG AACGCCAGGC AAAATCGAGC 
CGTAGTCTGA AGCCTCTCGC CAGGCTTAAC CCTTACCTGA TGCGGTATCG CGGCATGGCA 
TTGGCCGCCT TGGTGTTTCT GGCTCTGGCT GCCGTGACCA CGCTGGCGCT ACCGCTGGCC 
GTGCGCCGGA TGATCGACCA CGGCATGGCC TCTGCCGATG CCGGCTTCAT CAACAAGTAT 
TTTGCCATGC TGATCGTTCT GGCGCTGATC ATGGCCGCTT CCAGCGCGCT GCGCTATTAT 
TATGTCATCA CCATTGGCGA GCGGATCGTC TCGGACATCA GGCGCGAAGT GTTCGATCAT 
GTCAGCCGCC TGTCGCCTGC GTTTTTCGAC GTCAACCAAT CCGGCGAAAT TGTCTCGCGG 
CTGACAGCCG ATGCCACCCA GATCAAATCC GCCGTTGGCG CCAGCGCTTC TGTGGCATTG 
CGCAACATCA TCATGTGTTT TGGCGCCATG GGCATGATGA TCTATACCAG CCCGAAACTG 
TCGGTCATGG TGCTGGCTGC CATTCCCGTT ATCGTCTTTC CGCTGATTGC CTTTGGCCGC 
TCCGTGCGGC GCCGCTCCCG CCTTGCCCAG GACAGGCTAG CGGAGGCCGC AGCCTTTGCA 
GGCGAGAGTA TTGGGGCTGC CCGTACCGTC CAGGCCTTTA ATGGCGAAGC CGCCGCCAGC 
GCCCGCTACG GCGCTGCCGT CGAACAGGCT TTCCAGGCCG CCCGTATCGC CACCCGCTCG 
CGCGCCATCC TGACCGGGGT AGCCATCACG CTGGTGTTCG GCAGCATTGT CGGCGTGCTC 
TGGTATGGCG CCCAAAGCGT GCTGGCCGGA ACGCTGTCAG CGGGAACCCT GGGCCAGTTC 
CTGCTCTATT CCGTCATCGC CGCCTCATCG CTTGGCCAAT TGTCTGAGGT CTGGGGTGAA 
TTGATGCAGG CGGGTGGGGC CGCCGAACGG CTGACGGAAC TGCTGGCCGA GGTCTCTGCC 
GTGCAATCGC CTGATCATCC AAAGCCCTTG CCCACCCCCG CGCGTGGCGA AGTGTGGTTT 
GAGAATGTCG AGTTTTCTTA TCCCAGCCGC CCGGGACGCT CTGCCGTCAA AGGCCTCAGC 
TTTGCCGTCG ATGCCGGGGA AACCGTGGCG ATCGTCGGAC CATCAGGCGC AGGTAAAAGC 
ACGATCTTCT CGCTGATCCT GCGCTTCTAC GACCCGACAA GCGGGCGCAT CTGTCTTGAT 
GGAAGTGATC TGCGCGATGT GTCAACGGAG GCACTGCGCG GCAGCATTGC CATCGTACCC 
CAGGACGTGA CGATCTTTTC TGGCACGATC CACGATAATA TTGCCTTCAG CTGCCCCGAT 
GCCAGCCGCG AGGCCGTCAT CAAAGCGGCT CGCGCCGCCC AGGCCACGGA ATTCATCGAC 
CGGCTGGAGC GTGGCTATGA CACTGAAGTG GGTGAACGCG GTATCACGCT TTCAGGCGGC 
CAGCGTCAAC GCATCGCCAT TGCCCGCGCT ATCCTGAAGG ATGCGCCGGT GCTGCTGCTG 
GACGAGGCCA CCTCGGCGCT GGATGCCGAA AGCGAGACCC TGGTTCAAAA AGCCCTGGAC 
GAGCTGATGA AATCGCGCAC CACCATCGTC ATCGCCCATC GGCTGGCCAC CGTGCTAAAG 
GCGGACCGGA TTCTTGTCAT CGACGATGGC AAGGTGGTGG AACAGGGCAC CCACCAAAGC 
CTGATCCAGC AGGGCGGCAT CTATGCCCGG CTGGCCCGGC TGCAATTCCA GAGCGGAGCG 
CAGGATTTCC TGGCAGAAGC GAAGTAA 

 

Protein sequence

MAGAEYGSVS ENQERQAKSS RSLKPLARLN PYLMRYRGMA LAALVFLALA AVTTLALPLA 
VRRMIDHGMA SADAGFINKY FAMLIVLALI MAASSALRYY YVITIGERIV SDIRREVFDH 
VSRLSPAFFD VNQSGEIVSR LTADATQIKS AVGASASVAL RNIIMCFGAM GMMIYTSPKL 
SVMVLAAIPV IVFPLIAFGR SVRRRSRLAQ DRLAEAAAFA GESIGAARTV QAFNGEAAAS 
ARYGAAVEQA FQAARIATRS RAILTGVAIT LVFGSIVGVL WYGAQSVLAG TLSAGTLGQF 
LLYSVIAASS LGQLSEVWGE LMQAGGAAER LTELLAEVSA VQSPDHPKPL PTPARGEVWF 
ENVEFSYPSR PGRSAVKGLS FAVDAGETVA IVGPSGAGKS TIFSLILRFY DPTSGRICLD 
GSDLRDVSTE ALRGSIAIVP QDVTIFSGTI HDNIAFSCPD ASREAVIKAA RAAQATEFID 
RLERGYDTEV GERGITLSGG QRQRIAIARA ILKDAPVLLL DEATSALDAE SETLVQKALD 
ELMKSRTTIV IAHRLATVLK ADRILVIDDG KVVEQGTHQS LIQQGGIYAR LARLQFQSGA 
QDFLAEAK