Gene Avi_3627 details

Gene Information

• Locus tag: Avi_3627
• Symbol: ftsH
• ID: 7388044
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3010686
• End bp: 3012731
• Gene Length: 2046 bp
• Protein Length: 681 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643652442
• Product: metalloprotease
• Protein accession: YP_002550624
• Protein GI: 222149667
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0465] ATP-dependent Zn proteases
• TIGRFAM ID: [TIGR01241] ATP-dependent metalloprotease FtsH

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.840583
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGACGGAAA ACGAAGTCGG GGCCGCGCTT TGCCTTGGCA AGGCGCTTCA GGAAACCTAT 
GTTACTGTCC GACGATACGG CGTTTTCATG CGCCGAACAT TTTTTCTGGG GAGTTCGATG 
AACCCAAATT TTAGAAATCT CGCGCTGTGG GCGATCATAG CTTTGCTATT GGTCGCGCTG 
TTCAGCATGT TCCAGACGTC TCCGTCGCAA ACAAGTTCCC GCGAGATTCC CTATTCGCAA 
TTCTTGCGTG AAGTTGATTC GGGCCGTGTT CGCGACGTGA CCGTCACCGG CAACCGTATC 
ATTGGCAGCT ATGGCGAAAA CGGCGCCGCC TTCCAGACCT ATGCTCCGGT CGTGGATGAC 
AATCTGCTTG AAAAACTGCA AACCAAGAAT GTGATGATCG TTGCTCGTCC CGAGTCCGAC 
GGGTCTTCCG GCTTCCTTAG CTATCTCGGC ACTCTGTTGC CCATGCTGCT CATTCTCGGC 
GTCTGGCTGT TTTTCATGCG TCAGATGCAG GGTGGCTCGC GCGGTGCCAT GGGCTTTGGC 
AAGTCCAAGG CCAAGCTGTT GACCGAAGCA CATGGCCGCG TCACCTTTGA AGATGTGGCT 
GGCGTGGACG AGGCCAAGCA GGATCTCGAG GAAATCGTTG AATTCCTGCG CGATCCGCAG 
AAATTCCAGC GTCTCGGCGG CAAAATTCCG CGTGGCGTGC TGCTGGTCGG GCCCCCCGGC 
ACTGGTAAAA CCCTGCTGGC CCGCTCGGTC GCAGGCGAGG CCAATGTGCC GTTCTTCACC 
ATTTCAGGTT CGGATTTCGT TGAAATGTTC GTCGGCGTTG GCGCAAGCCG CGTGCGTGAC 
ATGTTTGAAC AGGCCAAGAA GAATGCACCC TGCATCATCT TCATCGACGA AATCGACGCT 
GTTGGCCGCC ATCGTGGCGC TGGTCTCGGC GGTGGCAATG ACGAGCGCGA ACAGACGCTG 
AACCAGCTTC TGGTCGAAAT GGACGGCTTC GAGGCCAATG AGGGCATCAT CCTGATTGCC 
GCCACCAACC GTCCCGACGT TCTCGATCCT GCCCTGCTGC GTCCGGGCCG TTTCGACCGC 
CAGGTCGTGG TGCCGAACCC CGACATTATC GGTCGCGAGC GCATTCTGAA GGTGCATGCC 
CGCAACGTGC CGCTGGCTCC CAATGTCGAT CTCAAGGTTC TCGCCCGTGG CACGCCCGGT 
TTCTCCGGTG CTGACCTAAT GAACCTCGTC AACGAAGCCG CCCTGATGGC TGCGCGCCGC 
AACAAGCGCG TCGTCACCAT GGCCGAATTC GAAGACGCCA AGGACAAGAT CATGATGGGT 
GCGGAACGCC GTTCCTCCGC CATGACCGAA GCCGAAAAGA AGCTGACCGC CTATCACGAG 
GCCGGCCATG CGATTACCGC GCTAAACGTC CCGGTCGCTG ACCCGCTGCA TAAGGCAACC 
ATCATTCCGC GTGGCCGCGC CCTTGGCATG GTCATGCAAT TGCCGGAAGG CGACCGCTAC 
TCCATGAGCT ATAAGTGGAT GGTGTCGCGT CTGGTGATCA TGATGGGTGG CCGTGTTGCC 
GAAGAAATCA CCTTCGGCAA GGAAAACATC ACCTCCGGCG CGTCTTCAGA CATCGAGCAG 
GCCACCAAGC TTGCCCGCGC CATGGTGACC CAATGGGGCT TTTCCGATAT CCTCGGTCAG 
GTTGCCTATG GTGAAAACCA GCAGGAAGTG TTCCTCGGCC ATTCTGTCTC GCAGAGCAAG 
AATGTCTCGG AATCAACGGC GCAGAAGATC GATACCGAAG TGCGCCGCCT GATTGACGAA 
GCCTATACCG AGGCCCGTCG TATCATCACC GAGAAGCATG ATGCCTTCGT TATTCTGGCC 
GAAGGTCTGC TGGAATATGA AACTCTGTCG GGTGAAGAAA TCAAGGCGCT GATCCGTGGC 
GAAAAGCCAA CCCGCGACAG TGGCGAAGAT GGCCCAACCC GCAGCTCTGC GGTTCCCTCC 
ACCGGTAAGA AGGACGCACC TAAGGGTGGC GAACCGGAAG CCGGACTGGA ACCCCAAGCG 
CATTGA 

 

Protein sequence

MTENEVGAAL CLGKALQETY VTVRRYGVFM RRTFFLGSSM NPNFRNLALW AIIALLLVAL 
FSMFQTSPSQ TSSREIPYSQ FLREVDSGRV RDVTVTGNRI IGSYGENGAA FQTYAPVVDD 
NLLEKLQTKN VMIVARPESD GSSGFLSYLG TLLPMLLILG VWLFFMRQMQ GGSRGAMGFG 
KSKAKLLTEA HGRVTFEDVA GVDEAKQDLE EIVEFLRDPQ KFQRLGGKIP RGVLLVGPPG 
TGKTLLARSV AGEANVPFFT ISGSDFVEMF VGVGASRVRD MFEQAKKNAP CIIFIDEIDA 
VGRHRGAGLG GGNDEREQTL NQLLVEMDGF EANEGIILIA ATNRPDVLDP ALLRPGRFDR 
QVVVPNPDII GRERILKVHA RNVPLAPNVD LKVLARGTPG FSGADLMNLV NEAALMAARR 
NKRVVTMAEF EDAKDKIMMG AERRSSAMTE AEKKLTAYHE AGHAITALNV PVADPLHKAT 
IIPRGRALGM VMQLPEGDRY SMSYKWMVSR LVIMMGGRVA EEITFGKENI TSGASSDIEQ 
ATKLARAMVT QWGFSDILGQ VAYGENQQEV FLGHSVSQSK NVSESTAQKI DTEVRRLIDE 
AYTEARRIIT EKHDAFVILA EGLLEYETLS GEEIKALIRG EKPTRDSGED GPTRSSAVPS 
TGKKDAPKGG EPEAGLEPQA H