| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3496 |
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| Symbol | |
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| ID | 7388768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2893645 |
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| End bp | 2896203 |
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| Gene Length | 2559 bp |
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| Protein Length | 852 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652336 |
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| Product | bacteriophytochrome protein |
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| Protein accession | YP_002550519 |
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| Protein GI | 222149562 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.552776 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGCTA CGCAGACCGT TGATCTCACC AATTGCGACC GCGAACCGAT CCACATTCCC
GGCAGCATTC AGCCGCATGG TTGCTTGCTA GCCTGTGATG CAGAGATGGC CGTTGTTCTG
CGCCACTCCG CCAATGCCGG GGAGATGCTC GGCGTCAAAG GCGCGGTGAA TGGTGAACAG
GTGCATGTGC TTTTAGGTGA CGACGCCACC CATGACCTGC GCAATGCTCT GGCGACGGCA
CCTGAAGCCT CACGCCCCGC CCTGCTTCCC AATCTGCGCC TCAGCTGCGG CCAGGTTTTC
AACGTGAGTG TCCACCGCCA GCGCGCCACT GTGATCATTG AACTGGAGCC AGCCAAGGGC
GAGCGCGATC CCTTGCAGTT GGCGCGGGAA ATGATCGGGC GGATCAAGGA CATCGACCAT
ATCGACAAGC TGATCCGCAC CTCCGCCAGG CTGGTGCGAG CCGTGCTCGG CTATGACCGG
GTGATGATCT ACCGCTTCGA CAATGACGGC TCCGGCAAGG TGGTGAGCGA GGCCAAGTCG
ATGGAGCTGG AAAGCTTCCT TGGCCAATAT TTCCCGGCAT CCGACATTCC ACAGCAGGCC
CGCAAGCTCT ATATGCAAAA TTCCATCCGG GTGATTTCCG ATGCAAGCGG CCACAAGGTG
GCGATCGAGC CGGAACTGGA TGCCTCCGGT GAGCCGCTTG ACCTGTCCTT TGCACATTTG
CGCAGCGTTT CGCCCATTCA TCTGGAATAT CTGCGCAATA TGGGGGTCGG CGCGTCGATG
TCGATCTCCA TCCTGTTGAA TGGCGAACTT TGGGGCCTGA TCGCCTGTCA TCATTACCGC
GCAAAGACCC TGTCCATGGC GCAACGGGTC GCCGCTGAAT TGTTTGGCGA GTTTTTCTCC
CTGACACTGC TTGCCCTGAA GCAGAAACAC AAGCTTGACC TGGCCACTGG CACACGCCAA
TCGCTGGACC GCTTTCTGCA CCTTGCCTCC CACCACGAAA ATCTTGAGGC GCTGTTTGGC
GAATGCCTGC CGGAATTCAG CAGCCTCGTG CCCTGCGATG GTGCGGGCCT TTGGATGAAC
GGAACCTGGA CGGCCATTGG CACCTGTCCG CCGCCTGCCG AAATCGAACC GCTGATACGC
TTCGTCAACA GCGTTGCCGA TGGACAGACC TGGGCCAGTC ACGCCTTGTC CCAATTTCTG
CCCAGAGCCG AAAGCTATTA TGAGACGGTG TCCGGCGCTA TGGTCGTGCC GCTCTCGGAA
ATTCCCCGCG ATTACCTGTT GTTTTTCCGC AAGGAACGGC TGCAAACCCT CAATTGGGCT
GGCAATCCCG ATAAATCTTA TGAGATCGGG CCGCTGGGCG ACCGGCTGAC ACCCCGCAAG
AGCTTCGCCA TCTGGAAGGA AGCCGTCACA AAGCAATCGG ACCATTGGAG CGAAAACGAC
AGGGAGGTCG CGGAAGCCAT TCGCGCCGTC ACCGTCAAGG TGGTGCTGCG CCACAACGAG
TTGATGCAGG AAGAGCGCAA CAAGGCCGAC ATCCGTCAAC GCGTGCTGAA TGAGGAATTG
AACCACCGGG TCAAGAATAT TCTGGCGGTG ATCAAGTCGC TGATCGGCGT TCCGACGCGG
CCGGAACACC AGTTGAGAGA CTATGTCACC TCGCTGAAGG GCCGCGTCCA CGCCCTGTCC
CATGCCCATG ACCAGGTGAT CCGCGGCAGC GGCAGCGGCC AGCTGAGCGA ACTGCTACAG
GCCGAGCTTG GTCCTTACCG CACTGAGGGT ACCGCCATCG CGCTTGGTGG CCCGATGGTC
GTGCTCGACA GCCGCGCCTA TGCCGTCACG GCCCTGGTTA TCCACGAGCT TGCGACCAAT
GCGGCGAAAT ACGGAGCACT CTCGCGCACC GGAGGCAAGC TCGACTTGAC TTGGCGCTGG
ACGGGAGAGG GAGATTGTGA AATTCTGTGG ACGGAAAGCG GCGGGCCAAC GGTGACCGCG
CCGACACGCC GGGGCTTTGG CTCCGCCTTG ATAGACCGTA GCATTCCCTA TGATCTCGGT
GGTAAGAGCA CCGTGAATTA TAACCCACAC GGCCTGAATG CGTATCTTTT GCTTCCTGCC
CGTTTCCTGT CCGGTTCTGG ACACGAGCCG GAAACCACAC ACGCCCCGCC CCCGGAGACA
GAGACCAGAT CCATGGCCAA TATCGACAAA ACCCTGCCGA TCCTGCTGGT TGAAGACCAG
ATGCTGATTG CGATGGATGC CGAAATGATG CTGGGCGATG CCGGCTTTAC CACTGTCATG
ACAGCAGGCT CCGTGCCGGA AGCCCTGGCG CAAATCAAGG TAACAGTTCC TGCCGTGGCC
GTGCTCGACA TCAACCTTGG CAATCATACC TCCGTACCGG TGGCCCAGGA ACTGCACCAG
CGAGGCATTC CCTTTCTATT TGCCACCGGC TATGCCGAGC GGTCGATCAT TCCGGAAGCC
TTCGGCGACG TCACGATCAT CAACAAGCCT TATGATGGAG AGGCGCTGGC CGATGCGGTG
CTGAGCCTGT TGCGCCAACC GGACGCCACC ACCAGCTAA
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| Protein sequence | MPATQTVDLT NCDREPIHIP GSIQPHGCLL ACDAEMAVVL RHSANAGEML GVKGAVNGEQ
VHVLLGDDAT HDLRNALATA PEASRPALLP NLRLSCGQVF NVSVHRQRAT VIIELEPAKG
ERDPLQLARE MIGRIKDIDH IDKLIRTSAR LVRAVLGYDR VMIYRFDNDG SGKVVSEAKS
MELESFLGQY FPASDIPQQA RKLYMQNSIR VISDASGHKV AIEPELDASG EPLDLSFAHL
RSVSPIHLEY LRNMGVGASM SISILLNGEL WGLIACHHYR AKTLSMAQRV AAELFGEFFS
LTLLALKQKH KLDLATGTRQ SLDRFLHLAS HHENLEALFG ECLPEFSSLV PCDGAGLWMN
GTWTAIGTCP PPAEIEPLIR FVNSVADGQT WASHALSQFL PRAESYYETV SGAMVVPLSE
IPRDYLLFFR KERLQTLNWA GNPDKSYEIG PLGDRLTPRK SFAIWKEAVT KQSDHWSEND
REVAEAIRAV TVKVVLRHNE LMQEERNKAD IRQRVLNEEL NHRVKNILAV IKSLIGVPTR
PEHQLRDYVT SLKGRVHALS HAHDQVIRGS GSGQLSELLQ AELGPYRTEG TAIALGGPMV
VLDSRAYAVT ALVIHELATN AAKYGALSRT GGKLDLTWRW TGEGDCEILW TESGGPTVTA
PTRRGFGSAL IDRSIPYDLG GKSTVNYNPH GLNAYLLLPA RFLSGSGHEP ETTHAPPPET
ETRSMANIDK TLPILLVEDQ MLIAMDAEMM LGDAGFTTVM TAGSVPEALA QIKVTVPAVA
VLDINLGNHT SVPVAQELHQ RGIPFLFATG YAERSIIPEA FGDVTIINKP YDGEALADAV
LSLLRQPDAT TS
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