| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3392 |
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| Symbol | vgrG |
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| ID | 7387015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2810028 |
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| End bp | 2812115 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643652259 |
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| Product | vgrG protein |
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| Protein accession | YP_002550443 |
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| Protein GI | 222149486 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.92482 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGACA TTCTGTCGCC GGCCGATTTC ATTCAAGCAA GCCGTGTGCT GAAGGTCTCG
TCACCCTTGG GTGAAGACCA GTTGCTGCCT GAACGGATGA TGGTTGACGA AGGCGTCAAT
CGTCTGTTCG AGATCACGTT GTCGGTGCGC GCCAAGCGCG AGGCAGTCAA GCCTGAAGAG
CTGATCGGCA AACTGGTCGA TGTCTCCCTG GAAATCCGGC AGGGTGAACT GGACGGGGAT
GGCGTGCGCC GACCGTTCAA CGGACTGGTG ACCAATCTGT CCGAGGGACC GCCGGTGACC
CGTGGATTAC GGTCCTATAC CCTGACCATC CGTCCGCAAC TATGGCTGCT GTCGCGCCGT
TCCGATTGCC GGATCTGGCA GAATATGACG GCCATCCAGG TGATGGAAAC ATTGCTCTCT
GAACACGGTC TTCCCAGTGC CGCCTATGCC CCTCTGCACA AGACACCGCC ATCGCGCGAA
TATTCTGTCC AATGGAATGA AACGGATCTC GATTACCTAC TGCGCCGCTT CGAGCAAGAC
GGGTTGTTCT ACTGGTTTGA ACATGAGACC GGCGTTCATC GCCTGAAGGT CAGCGACAGC
AAGGTGGCCT GGAGCAAGCC ATCGGCTGCG GCAGAAGGTG TCGACAAAGT CAGATTAGCC
CAAGGTTCAT CGGACCGCAA CCATATCAAT GAATGGATGC GGCAGTTCTC CTATGTCCCC
GGCCAGCGTG CCGGCGCGGA CTGGAATTTC GAGACGCCGA GCACTGTGCC GCTGAATGTC
ACGCCGTCGC TGATCCAGAT GCCGGGCGCC AAGCAGCGCG AGCTTTACGA ATATCCGGCC
CGCATCTCCG ATATCAAAGA AGCCGAAGTG GCTGAAACGT TCCGAACCCA GGCGACGGAA
GCCGACCATG AGCGGGTGAC GGGCCAGTCC AATGTGCGCT TCCTGGAAGC AGGACGCCGG
TTCACGCCCT ATGAGGAGCC GCATCCGGAA CACAAATACG AAGAGCATGT GATCGTCAGG
ATTACCCATT GGGTCGTTGA TCGCTCCTAT GAAACGACGG AGAACGAACC AGAATATCGC
AATGAGTTCG AGGCTATCCC GTCACGCGTG CCGCTAACCC CGCATCGTGA CACGAAACGC
CCCCGCATTG AGGGGGCGCA GGTGGCGATC GTTGCAGGGC CATCGGGCGA GGAGATCCAC
ACCGACCAGT ATGGCCGCAT CAAGGTTTGG TATCCCTGGG ACAGGCGCGC CAAGAAGGAC
GGCTCTGATA CCTGTTGGGT GCGGGTGGCG CAAAATTGGG CGGGCGGCCA ATGGGGCGGC
CAGATCATCC CGCGCATTGG CATGGAGGTG ATGGTTGCCT TTATCGACGG CGATCCTGAT
CGGCCGCTCG TGACCGGTGT GGTGCCGAAC CCGAAGAATG CTGTGCCTTA TACCTTACCT
GCGAATAAGA CAAAGAGCGT GTTCCGGACG AATACTCACC AGGGTAAAGG TTTCAATGAA
TTGAGCTTCG AAGATGAGAA GGAACGCGAG GAAATATATC TTCATGCCCA AAAGGATATG
AATGTTCACG TTCTTAACGA CAGATCCAAA AGAATAGAAA ACGATCAACA CGAATTCATT
GGTCGCGACA AAACCATACA GGTTGCCGGA GATCATGAAG AGGTAATCGC CGGAAACATG
TCGATTGCAG TTGGGCGGAA CAAGCTTTCT GAGTTCCTCT TATCCCGGAC GGGGAATTTA
TTTAAAAGTG TTGGAGGTCT TCTCGAGAAA TTCCATATTC CCGATCCGCT TAATCCTGGA
AAGGGAAACT TCCAGATTTT CGTTGAGAAA AATAAATCTG AAATTGTGAA TGGCGGATCC
TCCGAGGTTG TTGGGGTGGT TAAGTCTACA ATTGTGGGGA ATGTTCAACA GACCACGGTT
GGCAGGAAGA AAAGCCTCAT AGTGCGCGGT GACTATCAGG AAGATATCGG CAAAAGCCGT
CGTATCTATG TTGGCGAAGA ATTTCTTCTG CAGGTCGGAA AAGATGCGTC GATCCATGTA
AAAGACGGAA AAATCTATCT AAAAGCGCTG GAAATTCATC AGAACTAA
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| Protein sequence | MDDILSPADF IQASRVLKVS SPLGEDQLLP ERMMVDEGVN RLFEITLSVR AKREAVKPEE
LIGKLVDVSL EIRQGELDGD GVRRPFNGLV TNLSEGPPVT RGLRSYTLTI RPQLWLLSRR
SDCRIWQNMT AIQVMETLLS EHGLPSAAYA PLHKTPPSRE YSVQWNETDL DYLLRRFEQD
GLFYWFEHET GVHRLKVSDS KVAWSKPSAA AEGVDKVRLA QGSSDRNHIN EWMRQFSYVP
GQRAGADWNF ETPSTVPLNV TPSLIQMPGA KQRELYEYPA RISDIKEAEV AETFRTQATE
ADHERVTGQS NVRFLEAGRR FTPYEEPHPE HKYEEHVIVR ITHWVVDRSY ETTENEPEYR
NEFEAIPSRV PLTPHRDTKR PRIEGAQVAI VAGPSGEEIH TDQYGRIKVW YPWDRRAKKD
GSDTCWVRVA QNWAGGQWGG QIIPRIGMEV MVAFIDGDPD RPLVTGVVPN PKNAVPYTLP
ANKTKSVFRT NTHQGKGFNE LSFEDEKERE EIYLHAQKDM NVHVLNDRSK RIENDQHEFI
GRDKTIQVAG DHEEVIAGNM SIAVGRNKLS EFLLSRTGNL FKSVGGLLEK FHIPDPLNPG
KGNFQIFVEK NKSEIVNGGS SEVVGVVKST IVGNVQQTTV GRKKSLIVRG DYQEDIGKSR
RIYVGEEFLL QVGKDASIHV KDGKIYLKAL EIHQN
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