| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3377 |
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| Symbol | |
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| ID | 7387002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2795811 |
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| End bp | 2798168 |
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| Gene Length | 2358 bp |
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| Protein Length | 785 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652246 |
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| Product | ornithine decarboxylase protein |
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| Protein accession | YP_002550430 |
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| Protein GI | 222149473 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTATT TCAGACGCTT CAACTTCTTG TTCGCCACAC CCTCGTTCGA CAGCGAGGAT
TTGGAAGGCG TTCGTTACAA ACAGATCATT CAGGAGATCG AGCGTTCCGG TTTTGAAGTG
GTGCGTGCCC GCAATCTGGA CGACGCAGAG ATCGTTGTTC AGACTGATGC CGCCATCGGC
TGTATGATGG TCGATTGGGG CAAAAAGGGG CTCGAAGGCA AGACCTCTCA CCTCATAAAC
TTGATGCGCC GCCGCGGGCT GGATTTTCCC ATCATCCTCC TGATCCGTGG AAAGCGTTTC
GAGGACGTGC CGGTCGAGGT GCTCGACTTC ATCGATGGTT ACGTTTTCCT GTCGGAGGAA
ACGCCCGCCT TCATCGCGAA GAACCTCATT AGCCGTCTGA AGCAATATGC GGAAACGCTG
AAAACGCCGT TCTTCGGCGC GCTCGTGGAT TACGCAGAGG AAGGTAACCA TCTCTGGACT
TGTCCCGGGC ACAATGGCGG CGTGTTCTAC AGCCGCAGCC CGATCGGCCG CGTGTTCATG
GAGCATCTCG GCGAAGCGGT CTTCCGCGAC GACCTTGACA ATTCCGTGCT CGACCTCGGC
GACCTCCTCA CTCATGAGGG GCCGGCGCTT GCGGCACAGA AGGAAGCGGC AAAGATCTTC
GGCGCCGAGA AGACCTATTT CGTGTTGAAC GGAACATCTA CCTCCAACAA GGTCGCGCTT
TCCGCCCTTG TCACGGATGG CGACCTCGTG CTGTTCGACC GCAACAATCA CAAGGCTGCG
CACCATGGGG CCCTGATGAT ATCGGGTGGC ATTCCCATCT ACCTGCCGAC CACGCGTAAC
GCTCATGGTC TCATCGGCCC GATCGACTAC GCGTCACTGG ACGAGACCGC GCTGCGCGCC
CGTATTCGCG CCAATCCCCT GGTGAAGGAT CCTGACGCCT GGCAGAAACC GCGGCCATTC
CGTGTTGCCG TCGTCGAGCA GTGCACCTAT GACGGCACGA TCCACAATGC CGAGATGATC
CTGAAATCGA TCGGTCATCT CTGTGACTAC ATCCTCTTCG ACGAGGCCTG GGCCGGGTTC
ATGAAGTTTC ACCCGCTCTA TGCGGGGCGG TTCGCCATGG GGCTCGCCAA TCTTGGCCCG
GATTCCCCGG GCATCATCGC CACCCAGTCC ACGCACAAGC AGCTCGCCAG CTTTTCGCAG
GCGTCGCAGA TCCACATGAA GGATCGCCAT ATTACCGGGC AAAAGCGGCG TGTGGAGCAC
CGGCGCTTCA ATGAGAGCTT CATGCAGCAT GCCTCCACTT CGCCCTTCTA TCCCCTGTTC
GCCTCGCTCG ACGTCGGCGC GCAGATGATG AAGGGTCGTT CCGGCGAGGT GCTGTGGGAC
GATACGATCC GCCTCGGGAT CGAACTCAGG AAGAAGATGC GCGCCGTACG CAGGGAATTC
GAGGACAAGG AGCCGCGTGC AGAGCGCCGT TGGTTCTTCG AGCCTTTCGT GCCGGATCGC
GTCTTGATCC CTGATGTTGC AAGCCCCGGT GCCTCGCACG ACGTGCCATG GGAGAGCATT
GCCACCGACC AGCTGGCGAC AAACCCGGCT TTCTGGCACC TCACCCCCGA TGCATCCTGG
CATGGTTTTA GCGGCATGGA ACAGGGGTTC GCCATGACGG ACCCCAACAA GTTGACGGTG
CTGACGCCGG GCTTCGACCG CAAGACTGGT CTCTATGCCG AACATGGCAT TCCTGCCCCG
ATCGTAGCGC AATATCTTCG CGAAAACCGC ATTGTTGCCG AGAAGAACGA CCTCAACTCC
TTGCTCTTCC TGCTGACGCC TGGGGTCGAG GCAAGCAAGG CCGGCACCCT GATAAGCGGC
CTCGTGGCCT TCAAGAAGCT GCATGACGAC AATGCATTGC TGGAAGAAGT GATCCCGGAA
TTCTACCGTC GGCGCCCGGG CCGCTATGCC GGCGTGCGCC TGCGCGATCT CTGCGGCGAT
CTGCACCGCT TCTTTCGGGA TGCCAACGTC AGCGCGTTGC AGGCAAAGCA GTTTTCTGCT
GCGCACCTAC CACCAATGGC GATGTCGCCG CATGACGCGG CACGCAGCCT GGTGCGCAAC
GACGTCGATT ACCTGCCGAT CGACGAGATT ACTGGACGCA TCGCGACAAC CCCCTTCGTG
GTCTATCCGC CGGGCATCGC CACCATCGTT CCGGGTGAGC GGCTCACCGA TCTGGCGCAG
CCGATGATCG ACTATCTCAA GATGTTCGAA TCCTGCTTCA ACACCTTCCC CGGGTTCGAA
GTGGAAATCC AGGGCGTCTA TCGCGAAACG GATGCCGCCG GGCGCGTGCG GCTCTATACC
TACGTCGTTG CGGAGTAG
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| Protein sequence | MDYFRRFNFL FATPSFDSED LEGVRYKQII QEIERSGFEV VRARNLDDAE IVVQTDAAIG
CMMVDWGKKG LEGKTSHLIN LMRRRGLDFP IILLIRGKRF EDVPVEVLDF IDGYVFLSEE
TPAFIAKNLI SRLKQYAETL KTPFFGALVD YAEEGNHLWT CPGHNGGVFY SRSPIGRVFM
EHLGEAVFRD DLDNSVLDLG DLLTHEGPAL AAQKEAAKIF GAEKTYFVLN GTSTSNKVAL
SALVTDGDLV LFDRNNHKAA HHGALMISGG IPIYLPTTRN AHGLIGPIDY ASLDETALRA
RIRANPLVKD PDAWQKPRPF RVAVVEQCTY DGTIHNAEMI LKSIGHLCDY ILFDEAWAGF
MKFHPLYAGR FAMGLANLGP DSPGIIATQS THKQLASFSQ ASQIHMKDRH ITGQKRRVEH
RRFNESFMQH ASTSPFYPLF ASLDVGAQMM KGRSGEVLWD DTIRLGIELR KKMRAVRREF
EDKEPRAERR WFFEPFVPDR VLIPDVASPG ASHDVPWESI ATDQLATNPA FWHLTPDASW
HGFSGMEQGF AMTDPNKLTV LTPGFDRKTG LYAEHGIPAP IVAQYLRENR IVAEKNDLNS
LLFLLTPGVE ASKAGTLISG LVAFKKLHDD NALLEEVIPE FYRRRPGRYA GVRLRDLCGD
LHRFFRDANV SALQAKQFSA AHLPPMAMSP HDAARSLVRN DVDYLPIDEI TGRIATTPFV
VYPPGIATIV PGERLTDLAQ PMIDYLKMFE SCFNTFPGFE VEIQGVYRET DAAGRVRLYT
YVVAE
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