| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3362 |
|---|
| Symbol | rhlE |
|---|
| ID | 7387509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2784817 |
|---|
| End bp | 2786271 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643652237 |
|---|
| Product | ATP-dependent RNA helicase |
|---|
| Protein accession | YP_002550421 |
|---|
| Protein GI | 222149464 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGCGAT CGTGGCTCAG TGTCTTGGCG CCCCGAAAGG TTTATGAATT GACCAGTTTT
AACGAACTTG GCCTCTCGCC GACTGTTGTC GCCACGCTGA CCCAGCTTGG CTTCGAGACC
CCTACCCCCA TCCAGGCGCA GGGTATTCCG GTGGTGATGG CCGGTCGCGA CCTGATTGGC
CTTGCCCAGA CCGGCACCGG CAAGACCGCT GCCTTTGGCC TGCCGATCAT TGAGTTGCTG
ATGAAGGACG AACGCCGTCC CGACAATCGC ACCACCCGCA CGCTGATTCT TGCCCCGACC
CGCGAACTCG TCAACCAGAT CGGCGACAAT CTGCGGTCCT TCATTCGCAA GACCCCGATC
AAGATCAACC AGGTGGTTGG TGGCGCATCG ATCAACAAGC AGCAGCTTCA GCTGGAACGT
GGCACCGACA TTCTGGTCGC CACGCCGGGC CGGTTGCTGG ACCTGATTTC CCGCAATGCT
ATTTCGCTGC GCGCCGTCAC CCATCTGGTG CTGGACGAAG CCGACCAGAT GCTGGATCTG
GGCTTCATCC ACGATCTGCG CAAGATTGCC AAGATGGTTC CGGCCAAGCG CCAGACCCTG
CTGTTTTCGG CCACCATGCC GAAGGCGATT GCTGATCTGG CCGGTAGCTT CCTCAACAAT
CCGGTCACTG TCGAAGTGTC GCCTCCGGGC AAGGCCGCCG ACAAGGTCGA GCAGTATGTT
CACTTCGTCA ACGGCCAGAA CCACAAGACC GAGCTGCTGA AGAAGACCCT TGCCGATCAT
CCCGATGGCC GTTCCATCGT TTTCCTGCGC ACCAAGCATG GCGCTGAAAA GCTGATGAAG
CACCTGGAAA TCACCGGTTT CTCGGTTGCC TCCATTCACG GCAACAAGAG CCAGGGCCAG
CGCGAGCGCG CCTTGAAGGG TTTCCGCGAT GGTTCGATCC GCACGCTGAT CGCCACCGAC
GTTGCCGCCC GCGGCATCGA CATCCCGGCT GTCAGCCATG TGTTCAACTA TGACCTGCCG
GAAGTGCCGG ATGCTTATGT CCACCGCATC GGCCGTACTG CCCGTGCTGG CCGCGACGGC
ATTGCCATCG CCTTCTGCGG TCCCGATGAA GCCCGACTGC TGCGCGACAT CGAGCGGTTG
ATGGGGATTG AAATTTCCGT TGCCAGCGGT GAAGCTCCGG CTGACCGTGG CCGCCCGGCC
CGTCCGACCC GCCGCGCAGG TGGCGGTGGT GCAGGGGCCG GTGCTGGCAA CCGCAACCAT
GGCAACCCGG CCCGCAAGGA TGGCCGTCCG CAAGGCCGTG GCCCGCGTGA AGAAGGTGAT
GGTGGCGAAC AGCGTTCGGC CCGCCCGGCC AACCGCAACA AGCCAGCCAA CGGTCGCCCG
GCCCGCCGCC CAGACCGTCC ACGCCAGGAC GGCCCGGCCC GCGCCGGTGC AGGCGGCCAG
CGCCGCGAGC GTTAA
|
|---|
| Protein sequence | MRRSWLSVLA PRKVYELTSF NELGLSPTVV ATLTQLGFET PTPIQAQGIP VVMAGRDLIG
LAQTGTGKTA AFGLPIIELL MKDERRPDNR TTRTLILAPT RELVNQIGDN LRSFIRKTPI
KINQVVGGAS INKQQLQLER GTDILVATPG RLLDLISRNA ISLRAVTHLV LDEADQMLDL
GFIHDLRKIA KMVPAKRQTL LFSATMPKAI ADLAGSFLNN PVTVEVSPPG KAADKVEQYV
HFVNGQNHKT ELLKKTLADH PDGRSIVFLR TKHGAEKLMK HLEITGFSVA SIHGNKSQGQ
RERALKGFRD GSIRTLIATD VAARGIDIPA VSHVFNYDLP EVPDAYVHRI GRTARAGRDG
IAIAFCGPDE ARLLRDIERL MGIEISVASG EAPADRGRPA RPTRRAGGGG AGAGAGNRNH
GNPARKDGRP QGRGPREEGD GGEQRSARPA NRNKPANGRP ARRPDRPRQD GPARAGAGGQ
RRER
|
|---|
| |