| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3323 |
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| Symbol | |
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| ID | 7387478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2748043 |
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| End bp | 2749779 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652206 |
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| Product | TPR repeat protein |
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| Protein accession | YP_002550390 |
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| Protein GI | 222149433 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.96902 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCCC TGGAAAAGCT ACAGGCCCAG CGCCAGAAAC TGGAACCGCT GCTGGCTATG
GCGCGCCAGT ATAAGCCAGC CGATCTGGCC AAATTGCCGC CAGAAGACCG CCGCAAGGCC
GAGGATCTGC AACAGATGGC CTGCAAGGCC GCACGCGATC TGGCCGAGAT TTCGATCCGC
CTTCACGACC ATGCCGGGGC AACAGAGCTT CTACAAGCGG TTCTATTGAT CCACGCCGAC
CCATCCGCCC ATAGCCGGCT TGCCGATCTG GCCCAGATCA ACGGGCGCTG GCCGGACGCA
ATCGCCCATT ATCAGGCCGC GATAGCAGCA GGCGGCCCGA ATGCCACGCT CTACAGCGCC
CTTGCCCATT GCCTGAAACA GGCTGGCCGC CATCAGGAGG CCAATGAGGC CTACGATCTT
CTCCTCAACC ACGACCCGAA CCATTTGGTC GCGCTGAGTG ACAAAAGTTT CCGCAGCCTG
ATTGCAGGTG ATTTCGAGCA GGGACTTGCG TTGGCTGAGC GGGCGGTAAG CGCCCATCCC
GGCGACATCA CAGCCCATTT TTACCTGGGA CAGGCGTTGC AGGGCGTCGG GCGGATGGAT
GAGGCAAAAG CCGCCTATCG CAAGGTACTG GACCTCGATC CCACCCATGT CGATAGCTAT
CTGCTGCTGG GCATGTTGAG CCGCGCCCGG CCAGACGATC CCGATATCGC CGCCATGCAG
GCCCTGCATG CAACGCTGGC AGAGGAACCT GCCCGGCGGC TGAAACTCGG CTTCGCGCTT
TACAAGGCGC TGAACGATAT CAGCCGATAT GACGACGCCT TCAGCTATCT CGAAGACGCC
AACCGTGAAC GGCGGCGGCA ATTCACGGCC TATACCATCG ATCAGGATCT TGACCTCATG
CAGGCATTGG AAGCTCGGTT CACCCCCGAC TTCATCCGCT CAACGCAAGA CAGCATCGCC
AAGGCGGGAT ATCTCCAGCC GGAACGGCCG ATCTTCGTGG TTGGCCTGCC GCGCTCCGGC
ACCAGCCTGA CCGAACAGAT CCTTGCCAGC CACGCCGATG TGTACGGCGC CGGTGAGTTG
GAAACGCTGA GCTATGCGAT TACCGACGCC TTCTTCGAGC CAGACCGCCA GACATTGCGC
GGCCCCGATA GCGTGACGTC TAAGGCCCTG GCCGATGCGG CCCGGCGCTA TATCGTCCCG
GTCCGCGAAA AAGCAGGAAA CGCCCGTGTC GTCGATAAGA TGCCGGTCAA TTTCCTCTGG
GTTGGCTTTA TCAAGCTGAT GTTTCCTGAC GCCAGGATCG TCATTATGAA GCGCGATCCG
CTGGCCAGCG GCTTTGCGCT TTATTCCAGC TATTTTCCCA GCGACGGCAT GCAATATAGC
TACGACCAGA CCGAGACCGC CCACTATATC GCCGCCCAGC GGCGGCTCTG CGCCCATTGG
CAATCCCTGT TTCCAGGCGA CGTGCTGGAG CTGGGCTATG AGCAACTGAC GCTCGACCAG
GAATCTGAAA CCCGCCGCCT CCTGGATTTT TGCGGCCTGC CCTGGGACGC AAACTGCCTC
GATTTCCACA AGGCTGAACG CGCGGTGATG ACACTCAGCA GCGCCCAAGT CCGCCAGGGG
CTCTATAGCG GCGTCGATAA AAAGACCACC CATTACCGCC ACCATTTGGG CGAGATGATT
GCCGGGTTGA CGCAGGCAGG ATTGATCAAC GAAGAACGCC TTGCAGCAAA TGCCTAA
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| Protein sequence | MSALEKLQAQ RQKLEPLLAM ARQYKPADLA KLPPEDRRKA EDLQQMACKA ARDLAEISIR
LHDHAGATEL LQAVLLIHAD PSAHSRLADL AQINGRWPDA IAHYQAAIAA GGPNATLYSA
LAHCLKQAGR HQEANEAYDL LLNHDPNHLV ALSDKSFRSL IAGDFEQGLA LAERAVSAHP
GDITAHFYLG QALQGVGRMD EAKAAYRKVL DLDPTHVDSY LLLGMLSRAR PDDPDIAAMQ
ALHATLAEEP ARRLKLGFAL YKALNDISRY DDAFSYLEDA NRERRRQFTA YTIDQDLDLM
QALEARFTPD FIRSTQDSIA KAGYLQPERP IFVVGLPRSG TSLTEQILAS HADVYGAGEL
ETLSYAITDA FFEPDRQTLR GPDSVTSKAL ADAARRYIVP VREKAGNARV VDKMPVNFLW
VGFIKLMFPD ARIVIMKRDP LASGFALYSS YFPSDGMQYS YDQTETAHYI AAQRRLCAHW
QSLFPGDVLE LGYEQLTLDQ ESETRRLLDF CGLPWDANCL DFHKAERAVM TLSSAQVRQG
LYSGVDKKTT HYRHHLGEMI AGLTQAGLIN EERLAANA
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