Gene Avi_3076 details

Gene Information

• Locus tag: Avi_3076
• ID: 7388631
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 2551806
• End bp: 2552465
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643652035
• Product: transcriptional regulator
• Protein accession: YP_002550219
• Protein GI: 222149262
• COG category: [K] Transcription
• COG ID: [COG2932] Predicted transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0011023
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGCGC GTCTCCGCGA ATTTCGCAGA GCGATCGGAG ATCCAGATCG TGAGGAGTTT 
GCTCGCTCTA TAGGTGTCAG TAAAACCACC TTGGCGTCTT ATGAACGCGG AGAGTCTGAA 
CCTACCGCCT CAGTGCTATT TGCCTATCGC GAAAAGCACG GCGCTGATGT TCTTTGGCTT 
GTTGGTGGCG AAGGCGAAAT GCGCGGATCG CAGTTATCTA GCGCTGCCGT TGCAGAACGC 
GACTTCGTAT TAATGCCACA ATACGACGTC TGCGCCTCAG CAGGAACGGG CCGCCTCCCC 
GTCAACCAGA TGCCAACCAG CGAAACAGCC TTCGAGCGTA AATTCCTCCG AGATCTCGGC 
GGCGCCCCCG ACCACTGCTT CCTCATGTGG TCCACCGGCG ACAGCATGCT GCCCTCAATC 
CCCGACAACG CCCTCCTCAT CGTCGACGCC AGCCAAACCA CCGTCGACCA CGGCCGCATC 
TACGTCTTCA GCGTCGGCAA CGCCGTCCTG GTCAAACGCG CAAATTGGCG GATGGATGGA 
AGACTAGACC TGATCTCCGA CAACACGGCC GGGAAGTATC CGGTGGAGAC GTTCGACGCG 
AACCGGGTTG AGGATTTGGC AGTGGTTGGA AGGGTGATTT TTGTGGGGCA TCCACCGTGA 

 

Protein sequence

MAARLREFRR AIGDPDREEF ARSIGVSKTT LASYERGESE PTASVLFAYR EKHGADVLWL 
VGGEGEMRGS QLSSAAVAER DFVLMPQYDV CASAGTGRLP VNQMPTSETA FERKFLRDLG 
GAPDHCFLMW STGDSMLPSI PDNALLIVDA SQTTVDHGRI YVFSVGNAVL VKRANWRMDG 
RLDLISDNTA GKYPVETFDA NRVEDLAVVG RVIFVGHPP