| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3006 |
|---|
| Symbol | |
|---|
| ID | 7388588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2512360 |
|---|
| End bp | 2513913 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643651993 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002550177 |
|---|
| Protein GI | 222149220 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4383] Mu-like prophage protein gp29 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.357056 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCAGA TCCTCGACCA GTATGGCAAC CCGATCGTCA AGGCCGCGAT GAAGCAGGAG
CAAGGCGGGC CGACGACGAC TGGCGTTCGC CAAGCGGCTG GCAATCATCA GGCACCCGGT
CTGACACCCC AGAAACTTGC CCGCATTCTG CGCGAGGCCA TTGATGGCGA TCCGGAGCGC
TACCTTGAGC TTGCGGAGGA CATGGAGGAA CGCAACGAGC ATTATGCTGG TGTTCTGGGT
GTGCGCAAAC GACAGGTCGC CGGACTGGAC ATCACGGTTG AGGCAGCCAG CGATAGTGCA
GATGATGTCC GCGATGCCGA CCTCGTGCGC GACTTTATAT CCCGCGATAC CTTTGAGGAC
GAGCTGTTCG ATATCCTCGA TGCCGTCGGA AAGAGCTTCA GCGCCACCGA AATCATCTGG
GACACATCCG AAGGCCAGTG GTCAATCAGG GCGCTCAAAT GGAATGATCC ACGATGGTTC
CGATTCGATC GCAATGATGG AGAGACCTTG AGACTGCGTG GTCCGGCCGG TGACGAAGAT
CTCTGGCCAG CCAAATGGAT TGTGCATCGC GCCAAGGTCA AATCGGGCCT GACCATTCGT
GGCGGCTTGG CCCGATCAGC GGCTTGGACC TATCTATTCA AGACCTTCAC GACTTCGGAT
TGGGCCATCT TCTGCGAGGC TTATGGCCAG CCGTTGCGGC TGGGCAAATA TGGCGCTGGC
GCAAGCGAGC CCGACAAAGA AAAGCTGCTG CGGGCCGTCT CCAGCATCGC GGCCGATTAT
GCCGCCATCG TGCCAGAAAG CATGGCGATT GAGTTTGTCC AGGCGCAATT GTCCGGTAGC
CTCGATCTCT ATGAACGGCG GTCCGACTGG CTGGACCGGC AAATATCCAA GCTTGTCCTG
GGACAGACGG CTACCACCGA TGCACAGGCT GGCGGCTATG CGGTCGGCAA GGTGCATGAC
GGTGTGCGTG AAGATATCGA GCGGGCTGAT GCCCGCCAGT TGGCCGCGAC CCTAAATCGG
GATGTTGTCG TGCCACTGGT ATCGTTCAAT CGTGGCCCCC GAAAAAATTA TCCGAAGATC
TGCATCGGAC GTCCCGACGA TATCGATGTC AACAATCTGG TTGCTAATGT CGTCAAGCTC
GTCCCGCTCG GCTTGAAAGT CGGCATGTCC ACCATGCGCG ACAAGATTGG CCTGCCTGAC
CCAGGCAAGG ACGAGGAAAT CCTGAAGCCG GCCGCAGCGG CAGCACAGCC GCCTGCCGAT
CAGGCGGACA GCACACCGCC TGCGATTGCC ACCCAAAGCC AGATGGCCCG CGCCGATCGC
GATGCTATCG ATGCGGCAGC CGGCCAGATC TCGGCTGATG ATTGGCAGGA GATGACACCG
CCCGTGGTCG ATGGTTTGGC CGAGGCATTG AGCAAAGCGA CGTCGATCGC GGAGGCACAG
GCGATCCTTG CGGCTCAAGT CAGCGCCATG GGCGTCAATG CCTTTGTCGA GCAACTCGCT
CGTGCTGCGT TCTCGGCCCG GATCTCCGGT GAAGCCGATG AGCCGCTCTC ATGA
|
|---|
| Protein sequence | MAQILDQYGN PIVKAAMKQE QGGPTTTGVR QAAGNHQAPG LTPQKLARIL REAIDGDPER
YLELAEDMEE RNEHYAGVLG VRKRQVAGLD ITVEAASDSA DDVRDADLVR DFISRDTFED
ELFDILDAVG KSFSATEIIW DTSEGQWSIR ALKWNDPRWF RFDRNDGETL RLRGPAGDED
LWPAKWIVHR AKVKSGLTIR GGLARSAAWT YLFKTFTTSD WAIFCEAYGQ PLRLGKYGAG
ASEPDKEKLL RAVSSIAADY AAIVPESMAI EFVQAQLSGS LDLYERRSDW LDRQISKLVL
GQTATTDAQA GGYAVGKVHD GVREDIERAD ARQLAATLNR DVVVPLVSFN RGPRKNYPKI
CIGRPDDIDV NNLVANVVKL VPLGLKVGMS TMRDKIGLPD PGKDEEILKP AAAAAQPPAD
QADSTPPAIA TQSQMARADR DAIDAAAGQI SADDWQEMTP PVVDGLAEAL SKATSIAEAQ
AILAAQVSAM GVNAFVEQLA RAAFSARISG EADEPLS
|
|---|
| |