| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2893 |
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| Symbol | murD |
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| ID | 7386083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2415242 |
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| End bp | 2416657 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643651910 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_002550095 |
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| Protein GI | 222149138 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCCGG TTTCAAGCTT TTCCGATCGC AGCGTCGCCC TGTTCGGGCT TGGCGGCTCC
GGCCTTGCCA CGGCGCGCGC CCTGGTGGCC GGGGGTGCGG CGGTGACGGT CTGGGATGAC
AATCCTGACA GCGTTGAGAA AGCGCGGGCA GAAGGGCTGG AGGCACGGGA TCTACGCCAG
ATCGACTGGA GCGGGCTTTC CGCCTTTGTT TTGTCGCCGG GCGTGCCGCT GACCCATCCC
AAGCCGCATT GGACGGTGGA TCTGGCAAGG GCAGCAGGCG TCGAGATCAT CGGCGATATC
GAGCTTTTCG TGCGCGAGCG GCAGGCGAAA GCCCCGGATT GCCCGTTCAT CGCCATTACC
GGCACCAATG GCAAATCGAC CACCACGGCG CTGATTGGCC ATATTCTGCG CCACAACGGT
TATGATGTGC AGATCGGCGG CAATATCGGC ACGGCGGTGC TGACCCTGGA GCCGCCCGCG
CCTGATCGTT ATTATGTAGT GGAATGCTCA TCCTACCAGA TTGATCTTGC CCCCGGCATT
GATCCAACGG CAGGCATTCT CCTGAACCTC ACCCCCGACC ATCTCGACCG CCATGGCAGC
ATGGAAAATT ATGCGGCTGT GAAGGAGCGG TTGGTCTCAG GCAGTGATGT GGCGATCATC
GGCGTCGATG ACGACTATTG CCTTGAGATC GCCAAGCGTT TGGAAGAGGC GGGCAAAGAG
GTCGTGCGGA TTTCCAAGGG CCAGCCTTTG ACCGACGGTC TTTACAATGA CGGCCAGCGG
ATTGTGCGTG GCTCTGGTGG AGCCGCCGAG GTGATTGCCG ACCTGAACGG GATCGCCACG
CTGCGTGGCA GCCACAATGC TCAGAACGCG GCAGCGGCCA TTGCCGCTTG TATGGCGGTG
GGATTGTCCA AAGACCAGAT TCAGGCCGGA TTGTCCTCCT TTGCAGGGTT GAAGCACCGG
ATGCAGCCGG TTGGGCGGCG GGGACATGTG GTCTTTGTCA ATGACAGCAA GGCGACCAAT
GCCGAGGCGT CTGCACCGGC CTTGTCCAGT TATGAGCGGA TCTACTGGAT TGCTGGCGGC
CTGCCCAAGC AGGGTGGCAT TGCCAGCCTT TCGCCGCTGT TTCCGCGCAT TGCCAAGGCC
TATCTGATCG GCGAGGCAGC GTCCGGCTTT GCGGCTACGC TTGGCAATGC CGTTGCTTAC
GAGATTTCCG GTACGCTGGA CCGGGCGCTT GCCCATGCCA GCGCCGATGC GCAAGACGAT
GGGAATGGCG GCGAGGTTGC CGTGATGCTT TCCCCGGCTT GCGCAAGCTT CGACCAGTAC
AAGAATTTTG AAGTCAGGGG CGAAGCCTTC GTTTCGCTGG TAGCCGGGCT TGACGATGTG
ACGATGCTGA TCCAACAGGC TTCAGGAGAG ACATGA
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| Protein sequence | MIPVSSFSDR SVALFGLGGS GLATARALVA GGAAVTVWDD NPDSVEKARA EGLEARDLRQ
IDWSGLSAFV LSPGVPLTHP KPHWTVDLAR AAGVEIIGDI ELFVRERQAK APDCPFIAIT
GTNGKSTTTA LIGHILRHNG YDVQIGGNIG TAVLTLEPPA PDRYYVVECS SYQIDLAPGI
DPTAGILLNL TPDHLDRHGS MENYAAVKER LVSGSDVAII GVDDDYCLEI AKRLEEAGKE
VVRISKGQPL TDGLYNDGQR IVRGSGGAAE VIADLNGIAT LRGSHNAQNA AAAIAACMAV
GLSKDQIQAG LSSFAGLKHR MQPVGRRGHV VFVNDSKATN AEASAPALSS YERIYWIAGG
LPKQGGIASL SPLFPRIAKA YLIGEAASGF AATLGNAVAY EISGTLDRAL AHASADAQDD
GNGGEVAVML SPACASFDQY KNFEVRGEAF VSLVAGLDDV TMLIQQASGE T
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