Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2708 |
Symbol | |
ID | 7388368 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2244820 |
End bp | 2245614 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643651769 |
Product | ABC transporter membrane spanning protein (polyamine) |
Protein accession | YP_002549956 |
Protein GI | 222148999 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.319241 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGCGTC TTGGTCCGAT CGCTCTGATT TTTCATGCGA TATTTGTGCT CTTCATTCTC GCGCCGCTTT TCATGGTCAT AGCCGTCGCG TTTACGGACA AGGGGTATCT TTCCTTGCCA ACAGATGGCC TGTCGCTCAG GTGGTTTCGC GCGATTTTTG ATAATCCAGA TTTCACCTCC GCTTTCTGGC TATCCATCTG GCTCGCGCTG ATCTCAGCGT CTATTGCTGT CCTGCTTGCG GTGCCCGCAG CGCTGGCCAT TGCCCGTCAT CACTTCCTCG GGCGTGATAC GATTGCCGCC TTCCTGATGT CGCCGCTGAT GATCCCACAC CTCGTTCTCG GCGTGGCTCT GTTGCAATTC TACGCCAAAA TCGGTCTGGG AGGCACGTTT TCCGGTCTTG TTGCATCCCA TGTCGTGCTG GTGACGCCTT ACGCATTGCG GTTGACCCTA GCCTCGTTGA CGGGACTTCC GAGTGATGCA GAACATGCGG CATCGACGCT TGGTGCCTCC AAATTCACCA TCTTTCGCCG GATCACGCTT CCCCTCATTT TGCCGGGCGT CGCTGGCGGT TGGTTGCTGG CCTTCATCAC CAGCTTCGAC GAGCTGACAA TGAGTATCTT TGTTGCGGCA CCCGCCACGC AGACGCTTCC CGTTAAAATG TACAACCACA TCACCAACAC GATCGACCCT TTGGTCGCAT CTGTCTCCAC TGTGCTGATC GTGCTGACAT TTGTCTTCAT GCTCATCCTT GACCGGTTCT ACGGGCTGGA CAAAATTTTC GTTGGGAAGA ACTGA
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Protein sequence | MQRLGPIALI FHAIFVLFIL APLFMVIAVA FTDKGYLSLP TDGLSLRWFR AIFDNPDFTS AFWLSIWLAL ISASIAVLLA VPAALAIARH HFLGRDTIAA FLMSPLMIPH LVLGVALLQF YAKIGLGGTF SGLVASHVVL VTPYALRLTL ASLTGLPSDA EHAASTLGAS KFTIFRRITL PLILPGVAGG WLLAFITSFD ELTMSIFVAA PATQTLPVKM YNHITNTIDP LVASVSTVLI VLTFVFMLIL DRFYGLDKIF VGKN
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