Gene Avi_2708 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2708 
Symbol 
ID7388368 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp2244820 
End bp2245614 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content55% 
IMG OID643651769 
ProductABC transporter membrane spanning protein (polyamine) 
Protein accessionYP_002549956 
Protein GI222148999 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1177] ABC-type spermidine/putrescine transport system, permease component II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.319241 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGCGTC TTGGTCCGAT CGCTCTGATT TTTCATGCGA TATTTGTGCT CTTCATTCTC 
GCGCCGCTTT TCATGGTCAT AGCCGTCGCG TTTACGGACA AGGGGTATCT TTCCTTGCCA
ACAGATGGCC TGTCGCTCAG GTGGTTTCGC GCGATTTTTG ATAATCCAGA TTTCACCTCC
GCTTTCTGGC TATCCATCTG GCTCGCGCTG ATCTCAGCGT CTATTGCTGT CCTGCTTGCG
GTGCCCGCAG CGCTGGCCAT TGCCCGTCAT CACTTCCTCG GGCGTGATAC GATTGCCGCC
TTCCTGATGT CGCCGCTGAT GATCCCACAC CTCGTTCTCG GCGTGGCTCT GTTGCAATTC
TACGCCAAAA TCGGTCTGGG AGGCACGTTT TCCGGTCTTG TTGCATCCCA TGTCGTGCTG
GTGACGCCTT ACGCATTGCG GTTGACCCTA GCCTCGTTGA CGGGACTTCC GAGTGATGCA
GAACATGCGG CATCGACGCT TGGTGCCTCC AAATTCACCA TCTTTCGCCG GATCACGCTT
CCCCTCATTT TGCCGGGCGT CGCTGGCGGT TGGTTGCTGG CCTTCATCAC CAGCTTCGAC
GAGCTGACAA TGAGTATCTT TGTTGCGGCA CCCGCCACGC AGACGCTTCC CGTTAAAATG
TACAACCACA TCACCAACAC GATCGACCCT TTGGTCGCAT CTGTCTCCAC TGTGCTGATC
GTGCTGACAT TTGTCTTCAT GCTCATCCTT GACCGGTTCT ACGGGCTGGA CAAAATTTTC
GTTGGGAAGA ACTGA
 
Protein sequence
MQRLGPIALI FHAIFVLFIL APLFMVIAVA FTDKGYLSLP TDGLSLRWFR AIFDNPDFTS 
AFWLSIWLAL ISASIAVLLA VPAALAIARH HFLGRDTIAA FLMSPLMIPH LVLGVALLQF
YAKIGLGGTF SGLVASHVVL VTPYALRLTL ASLTGLPSDA EHAASTLGAS KFTIFRRITL
PLILPGVAGG WLLAFITSFD ELTMSIFVAA PATQTLPVKM YNHITNTIDP LVASVSTVLI
VLTFVFMLIL DRFYGLDKIF VGKN