| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2686 |
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| Symbol | |
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| ID | 7388352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2226919 |
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| End bp | 2228337 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643651753 |
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| Product | Outer membrane secretion protein |
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| Protein accession | YP_002549940 |
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| Protein GI | 222148983 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.553025 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGGAGATG TATCCTTGTC GAGCCTTCGT AACGTGGCGT ATGCCGCAGC ATTTCTTCCG
CTGTTTTTTC AACCTGCCGT GCTGCATGCC GAAACCATCT TCGGCGCCAT GGAGAAGGCT
TATAAGAACA ATCCTGATCT GAACTCGGTG CGTGCCGCTC TGAGGGCAAC GGATGAGAGC
GTGACGATTG CCAAGGCCGG CTACAGGCCG CAACTGGGCT TTTCCGTCTC CGGCACTCAG
TCTTCCTTTG CCAATTTCAA TGGCACCGCG GTCGGCAATA TCCCAGCGGA TAAATATTCG
GCGGATTATT ATAAATCCGA CGTGCAGGTG ACATTGACCC AGCAGATTTT CGATGGATTC
CAGACGCTGA ACAATGTGCG CTCCTCGGAA GCGGGCGTGC TTTCCAATCG GGAAAGTATG
AAGGCGGATG AAATCCAGAT CCTGCTCGGC GCAGCCCAGG CCTACGCCGA TGTGGCGCGG
GACCAGCAGA TTGTCAGTAT CCGCCGCCAG AACCTGAACT TCCTCAAGGA ACAGCTGAAA
GCCGCCAATG CGCGGCTGGA GGTGGGCGAA GGCACCAAAA CCGATGTCAG CCAGGCAGAA
GCGCAGCTGG CGGGTGCCGA CAGTCTGCTG GCCTCCGCAA TCGCCCAGTT GAGACAGAGC
GAAGCATCCT ATATGCAGGT GGTCGGCGAG ATGCCGAAGG ATGTGCGTCA GCCTGTGCGC
GCCACCAAGG CGATGCCGAC CAATCTCGAC AAGGCCGTTG CTTTGGGAAT CAGAGAGCAT
CCCAGCGTGC TTGCCGCGCT GCATGCGGTA ACCTCGGCGC AATACCAGGT GAAATCGGCT
GAAGGCAGCC TGCTTCCAGG CGTCAGCATT CAGGGCAGCC TTGATCGGCA CAATACGGAT
AATCCCAGCG AGTCGACCGA CCGCGATTAT TCCGCGGCCT CGATTACAGC GCAGCTGAAA
ATTCCGCTCT ACCAGGGCGG TTCGGAATAT GGTCAGATCC GCAAAGCCAA GGAAACCGTT
GGTGCGCAGG AACTGAAAGT CGATTACGCC CGATTGAGCG TGCGAAAGCA GATCATGACC
GCTTTTGCCC AGATGCAAGC CGCAACGGCG GCCATCACCT CGGGCCGCAA GCAGGTTGCT
GCTGCAAAGC TCGCCTTGCA AGGCGTTATC GAGGAACGCA ATGTCGGCCA GAAAATCACC
CTTGACGTTT TGAACTCGCA GCAGACCGCG CTCGACGCGC AGGAAAGCCT GGTGAACGCG
CAGCGCAATG AAGTGGTGGC GAGTTACTCG TTGCTGGCGG CAACCGGCAC CTTGACGGTC
AGGAGCCAGG GATTGCAGGT GGCGGAGTAT AATGCAGAAG AGCATTACGA TGCCGTCAAG
GACCAGTGGT TTGGATTGCG GGCTGCCAAC GGCAAGTAA
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| Protein sequence | MGDVSLSSLR NVAYAAAFLP LFFQPAVLHA ETIFGAMEKA YKNNPDLNSV RAALRATDES
VTIAKAGYRP QLGFSVSGTQ SSFANFNGTA VGNIPADKYS ADYYKSDVQV TLTQQIFDGF
QTLNNVRSSE AGVLSNRESM KADEIQILLG AAQAYADVAR DQQIVSIRRQ NLNFLKEQLK
AANARLEVGE GTKTDVSQAE AQLAGADSLL ASAIAQLRQS EASYMQVVGE MPKDVRQPVR
ATKAMPTNLD KAVALGIREH PSVLAALHAV TSAQYQVKSA EGSLLPGVSI QGSLDRHNTD
NPSESTDRDY SAASITAQLK IPLYQGGSEY GQIRKAKETV GAQELKVDYA RLSVRKQIMT
AFAQMQAATA AITSGRKQVA AAKLALQGVI EERNVGQKIT LDVLNSQQTA LDAQESLVNA
QRNEVVASYS LLAATGTLTV RSQGLQVAEY NAEEHYDAVK DQWFGLRAAN GK
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