| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2658 |
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| Symbol | secD |
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| ID | 7386651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2198037 |
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| End bp | 2200607 |
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| Gene Length | 2571 bp |
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| Protein Length | 856 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651731 |
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| Product | bifunctional preprotein translocase subunit SecD/SecF |
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| Protein accession | YP_002549918 |
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| Protein GI | 222148961 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF
[COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCATT TCTCCCGCTG GAAAACCATT CTCCTCTGGC TTGCCGTCGT GGCGAGCGTC
CTGATCGCGC TGCCCGACCT GTTCAGCAAG GATCAACTGG CCCGTCTTCC GTCCTGGTTC
CCGAGCAAGC AGATGACGCT CGGCCTCGAT TTGCAGGGCG GCTCGCATAT CATGCTGAAG
ATCGAGCGCA ACGATATCGT CAAGGAGCGG CTTGAAGCCG TGGTTGGCGA TATCCGCAGC
AGTCTTCGCG ATGCGGGCGT TCGCTATACC GGGCTGAATG GCGTTGGCCA GGCGGTCCAG
GTCCGCATTA CCGATCCGGC TCAGCTTGAT GCGGCGCGCA AGGCCTTGCA GACACTAACC
GCGCCTGTCA GCACCGGCGG TTTCGGGTCG AGCAGCGTCC AGGAAGCGAC ACTGGACGAT
AGCGGCGATG GGGTGTTGAA GTTTAACCTC ACCGATGCCG GTATCGATTA CCGCATGTCC
TCGGCGCTCA CCCAGTCCAT CGAAGTCGTG CGCCGCCGCG TCGATGAGCT TGGCAATACC
GAGCCGTTGA TCCAGCGTCA GGGCTCCGAC CGCATCATCG TGCAGGTGCC GGGTCTGGAT
GATCCGCAGC GTTTGAAGAA TCTTCTGAAC CAGACCGCGA AACTAAGCTT CCGCATGGTC
GATACCAGCA TGTCGGCAAC CGAAGCGATC AGCGGCCGCC CGCCTGCCAC GTCCGAAGTG
CTCTACAGCC AGGATGAGGC CGCGGTGCCT TATCTGGTCG AAAAGCGGGT TCTGGTGTCC
GGTGAGGATC TCGTCGATGC GCAGGCAAGC TTCAATCAGC AAAATAACGA ACCGGTCGTC
AGCTTCCGCT TCGATAGCCG TGGTGCGCAG CGGTTTGCCC AGGCGACCCA ACAGAATGTC
GGGCGGCCCT TTGCCATCGT GCTCGACAAT CAGGTGATTT CCGCGCCTGT GATCCGTGAA
CCGATTGTCG GTGGCTCCGG CCAGATTTCT GGTAATTTCA CGGTGCAGGG CGCCAATGAC
CTGGCCGTCC TGCTGCGCGC TGGCGCACTG CCGGCAACCT TGACCGTGGT CGAAGAGCGC
ACCGTCGGCC CAAGCCTTGG CGCCGATTCG ATCCGCGCAG GTGTTTCGGC TGGATTCATC
GGGGCCGCGC TTGTCGTCGT GCTGATGATC GGGCTTTACG GCTTCTTCGG TGTGCTGGCC
GTTCTGGCGC TGTTTGCCAA TATCGTCATG ATTATTGCCA TCCTGACGCT GCTTGGATCG
ACGCTGACGC TGCCGGGCAT CGCCGGTATT GTGTTGACCA TCGGTATGGC GGTTGATTCC
AACGTGCTGA TCTACGAGCG TATCCGAGAG GAATACAAGA GCGGGCGTTC CCTGATCCAG
TCGATCGATA TCGGCTTCAA CAAGGCCTTG GCGACGATTG TCGATGCCAA TGTTACGACG
CTGATTGCTG CTGGCGTGCT GTTCTTCCTT GGCTCCGGTC CTGTACGCGG CTTTTCGGTG
ACGCTGGCCA TCGGTATCAT CACCACCGTA TTTACCGCCT TTGGCTTGAC CCGCTGGATG
TTTACCGTCT GGGTCAACAC GCGCCGTCCC AAGGCTCTTC CCAAGGGGGT TCGGACCGGA
ATTTTCGACG GAACCAACAT CCCGTTCATG GGTGTCCGCC GTTACACGTT CCTGCTGTCG
GCGGCCTTGT CTATAGCCGC TCTCGTTGGT TTCGGCACAG TTGGTATGAA ACTCGGCATC
GATTTTACCG GCGGTTCGAT CATCGAATTG AAGGCGCGTC AGGGCAATGC TGATCCCGCC
GCCATTCGCG AACAATTGAG CAGTCTCAAC CTCGGCGATG TCCAGGTTCA GGGTTTTGGC
GATCCGAGCA GTGTGCTGGT CCGTTTGCAG GCCCAGGACG AGGGTGAAAA CGGCGAACAA
TCGGCTGTTG CCAAGGTGCG GGGCGCATTG GAACAGGCCT ATGAGTTCCG CCGCACCGAA
GTGGTCGGGC CGTCCGTGTC TGGTGAGCTG ACGAAATCGG CAACCATCGG CGTGCTGATT
TCGCTGATGG CGATCCTGGT CTATATCTGG ATCCGGTTTG AGTGGCAGTT TGCGGCAGGC
GCGATCATCG CAACCCTGCA TGACGTCATC CTGACGCTTG GCCTCTACGT GGTCACCGGG
GTGGAATTCG ACCTCAGTAG TATCGCGGCT ATCCTGACGA TTGTCGGCTA TTCGCTGAAC
GATACCGTGG TCGTCTATGA CCGCATGCGC GAGAACCTGC GCCGTTACAA GAAAATGCCG
CTGGATGTGT TGATCGACAC GTCGATCAAC CAGACCCTGT CGCGGACCAT CCTGACATCG
GTGACGACGC TTCTGGCTCT TCTGGCCCTG TTCCTGTTCG GTGGCGAAGT TATCCGCTCC
TTCACCTTTG CCATGCTGTT CGGGGTTCTT GTCGGCACAT TTTCCTCTAT CTATATGGCG
GCGCCGGTGC TGATCGCCTT CCGTCTGCGC CCTGAGGGCC AGGGCGAGCC GGATAAGGCT
GGAAAAGCAA AGCCGGAAAA GAATGGCGCG ACGGGCAAGG CGGGAGCATA G
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| Protein sequence | MLHFSRWKTI LLWLAVVASV LIALPDLFSK DQLARLPSWF PSKQMTLGLD LQGGSHIMLK
IERNDIVKER LEAVVGDIRS SLRDAGVRYT GLNGVGQAVQ VRITDPAQLD AARKALQTLT
APVSTGGFGS SSVQEATLDD SGDGVLKFNL TDAGIDYRMS SALTQSIEVV RRRVDELGNT
EPLIQRQGSD RIIVQVPGLD DPQRLKNLLN QTAKLSFRMV DTSMSATEAI SGRPPATSEV
LYSQDEAAVP YLVEKRVLVS GEDLVDAQAS FNQQNNEPVV SFRFDSRGAQ RFAQATQQNV
GRPFAIVLDN QVISAPVIRE PIVGGSGQIS GNFTVQGAND LAVLLRAGAL PATLTVVEER
TVGPSLGADS IRAGVSAGFI GAALVVVLMI GLYGFFGVLA VLALFANIVM IIAILTLLGS
TLTLPGIAGI VLTIGMAVDS NVLIYERIRE EYKSGRSLIQ SIDIGFNKAL ATIVDANVTT
LIAAGVLFFL GSGPVRGFSV TLAIGIITTV FTAFGLTRWM FTVWVNTRRP KALPKGVRTG
IFDGTNIPFM GVRRYTFLLS AALSIAALVG FGTVGMKLGI DFTGGSIIEL KARQGNADPA
AIREQLSSLN LGDVQVQGFG DPSSVLVRLQ AQDEGENGEQ SAVAKVRGAL EQAYEFRRTE
VVGPSVSGEL TKSATIGVLI SLMAILVYIW IRFEWQFAAG AIIATLHDVI LTLGLYVVTG
VEFDLSSIAA ILTIVGYSLN DTVVVYDRMR ENLRRYKKMP LDVLIDTSIN QTLSRTILTS
VTTLLALLAL FLFGGEVIRS FTFAMLFGVL VGTFSSIYMA APVLIAFRLR PEGQGEPDKA
GKAKPEKNGA TGKAGA
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