| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2624 |
|---|
| Symbol | cobA |
|---|
| ID | 7386625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2171624 |
|---|
| End bp | 2172466 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643651705 |
|---|
| Product | uroporphyrin-III C-methyltransferase |
|---|
| Protein accession | YP_002549892 |
|---|
| Protein GI | 222148935 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0007] Uroporphyrinogen-III methylase |
|---|
| TIGRFAM ID | [TIGR01469] uroporphyrin-III C-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0021256 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAAG ATGTTTTCAA GCCTTTGCCC CTATTGCAGC CGGGCCATGT CTGGCTGGCG
GGGGCAGGGC CGGGTGATCC AGGTCTGTTG ACGCTTTTGG CGGTGCGTGG CCTGTCCATG
GCGGATGTGA TTGTTCATGA CGCGCTGGTT GATGAGGCTT GCCTTTCCTA CGCCAATCCA
GGCGCGGTGT TGGAATATGC TGGAAAGCGC GGCGGCAAGC CTTCGGCCCG GCAGCGTGAT
ATTTCTCTGC GATTGGTGGA ACTGGCGAAA TCCGGCAAGC GGGTGCTGCG GCTGAAAGGC
GGCGACCCCT TCGTGTTCGG GCGCGGCGGC GAGGAGGCGC TGACATTGGT CGAGCATGGC
GTGCCGTTTC GCATCGTACC CGGCATTACC GCAGGCATTG GCGGGCTGGC CTATGCGGGC
ATCCCCGTCA CCCACCGCGA GATCAACCAT GCTGTCACCT TCCTGACCGG CCATGATTCG
TCCGGCGCCA TGCCTGACGG AATTGATTGG CAGGCGGTAG CCAAGGGTTC CCGGGTGATT
GTCATGTATA TGGCGATGAA GCATATGGGC CACATCGCCG CGCAATTGCT GGCGGCGGGG
CGCCAGCCCG AAGAGCCGCT GGCCTTTGTC TGCGACGCGG CAACGGACCG GCAACGGGTG
CTGGAAACCA CGCTGGGTGA GGCCGAAGAC GCCATGCAGG CCGCTTGTAT CCAGCCACCC
GCCATCGTGG TGCTGGGCGA GGTGGTGCGG CTTCGCCCCT CGCTGGACTG GCTCGGTGCC
TTGTCGGGCC GGGCCTTGCA ACCGGACCCC TTTGCCAATC GAAGCCTAAA GGATACGGCA
TGA
|
|---|
| Protein sequence | MMQDVFKPLP LLQPGHVWLA GAGPGDPGLL TLLAVRGLSM ADVIVHDALV DEACLSYANP
GAVLEYAGKR GGKPSARQRD ISLRLVELAK SGKRVLRLKG GDPFVFGRGG EEALTLVEHG
VPFRIVPGIT AGIGGLAYAG IPVTHREINH AVTFLTGHDS SGAMPDGIDW QAVAKGSRVI
VMYMAMKHMG HIAAQLLAAG RQPEEPLAFV CDAATDRQRV LETTLGEAED AMQAACIQPP
AIVVLGEVVR LRPSLDWLGA LSGRALQPDP FANRSLKDTA
|
|---|
| |