| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2409 |
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| Symbol | |
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| ID | 7386042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1978854 |
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| End bp | 1980479 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651535 |
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| Product | hypothetical protein |
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| Protein accession | YP_002549724 |
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| Protein GI | 222148767 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3507] Beta-xylosidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCATCA ACCCAATCCT GCCGGGCTTC AACCCGGACC CGTCCATCTG CCGGGTGGGG
GAGGATTATT ATATCGCCAC CTCAACCTTC GAATGGTATC CGGGCGTCCA GATCCACCAT
TCCCGTGATC TGGTGAACTG GACGTTGATC CGCCGCCCGC TGGAGCGCCA AAGCCAGCTG
GACATGCGCG GCAATCCCGA TAGCTGCGGC ATCTGGGCAC CGTGTCTGTC CTATGCCGAT
GGGCTGTTCT GGCTGGTCTA TACCGACGTG AAGCGCCTTG ACGGCAGCTT CAAGGATGCC
CCCAATTATA TCGTGACCTC GCCAAGCATT GAGGGCGAAT GGTCCGATCC GTTCTATGTC
AATGCTTCCG GCTTTGACCC CTCGCTGTTT CACGATGACG ATGGCCGCAA ATGGTTCGTC
AACATGCAAT GGAACCATCG AGCTGAGGCT TTCAATACCA TTGGCCCGCA TCCAGCTTTT
GACGGCATCC TGTTGCAGGA GTGGGACCCG GTGACGAAAG CCCTGACGGG ACCGGTACGC
AATATCTATC CCGGAACCGA GCTTGGACTG GTCGAAGGAC CGCATCTGTT CAAGCGTAAT
GGCTGGTACT ATCTGACGGT TGCTGAAGGT GGCACAGGCT ACGACCATGC GGTCACCATG
GCGCGGTCGC GCCATATCGA AGGCCCCTAT GAGACCCATC CTGACCGGCA TCTGATCACG
TCTAAGGACA ATCCCAAGGC AGAGCTGCAA AAGGCCGGCC ATGGCCAATA TGTGGAAACG
TCTGACGGGC AGGCCTATCA CACCCATTTA TGCGGTCGCC CGCTGGCGCC TTATCGCCGT
TGCACGCTGG GGCGTGAGAC ATCCTTGCAG AAATGCGTCT GGAAGGACGA TTGGCTCTAT
CTGGAGCAGG GCGATCAGGT GCCTGCGGTC TACGTGAAGC CGCCTTTACC GGCAGAGCGT
TTGGAAAAGC CTGCAATCAC CGAATACCGT TTCGATCCGT CCGGCCTGCC GATGGATTTT
CAATGGTTGC GGACGCCAGA GCCGGAGCGG ATTTTCAACC TCTTGGCAAG ACCCGGATTT
CTGCGACTCT ATGGACGTCA AAGCATTGGC AGTTGGTTCG AGCAAGCGCT TGTCGCCCGT
CGCCAGCAGC ATCACTCCTT CCGGGCGCAA ACCCGGATCA CTTTTGCGCC GCAGACCTAT
CAGCAGGCGG CGGGCCTGAC CCATTATTAT AACCGCTACA AGTTTTACGC CCTGACTGTG
ACCTGGCACG AGACGCTGGG CCGGGCTCTG ACCATCCTGT CCTGCCCCGG TGACTATCCG
GGCGGCAAGC TGGTCTTTCC CATCGATGCC GGATTGGCTC TGCCGGATGG CGACATCGAT
CTGGCGATGG AGGTCATGGA TAACGATCTG CAATTCCTCT GGCGTCCAGC GGGCGCAAGC
CTGGATGGTT CCGGTGAGGC ATGGCAGACG GTTGGCCCGA TCCTCGACGC GGGCGTCATT
TCTGATGAGG GCGGACGCGG CTTTGACGCA TCCTTCACGG GTGCCTTTAC CGGCCTGTTC
GCCTTCGATC TGACGGGGCA GGCGAGACCT GCCGATTTCG ACGGCTTCAT CTACGAGGCG
CGTTGA
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| Protein sequence | MIINPILPGF NPDPSICRVG EDYYIATSTF EWYPGVQIHH SRDLVNWTLI RRPLERQSQL
DMRGNPDSCG IWAPCLSYAD GLFWLVYTDV KRLDGSFKDA PNYIVTSPSI EGEWSDPFYV
NASGFDPSLF HDDDGRKWFV NMQWNHRAEA FNTIGPHPAF DGILLQEWDP VTKALTGPVR
NIYPGTELGL VEGPHLFKRN GWYYLTVAEG GTGYDHAVTM ARSRHIEGPY ETHPDRHLIT
SKDNPKAELQ KAGHGQYVET SDGQAYHTHL CGRPLAPYRR CTLGRETSLQ KCVWKDDWLY
LEQGDQVPAV YVKPPLPAER LEKPAITEYR FDPSGLPMDF QWLRTPEPER IFNLLARPGF
LRLYGRQSIG SWFEQALVAR RQQHHSFRAQ TRITFAPQTY QQAAGLTHYY NRYKFYALTV
TWHETLGRAL TILSCPGDYP GGKLVFPIDA GLALPDGDID LAMEVMDNDL QFLWRPAGAS
LDGSGEAWQT VGPILDAGVI SDEGGRGFDA SFTGAFTGLF AFDLTGQARP ADFDGFIYEA
R
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