| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2388 |
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| Symbol | |
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| ID | 7386026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1956980 |
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| End bp | 1959439 |
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| Gene Length | 2460 bp |
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| Protein Length | 819 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643651519 |
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| Product | heavy-metal transporting P-type ATPase |
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| Protein accession | YP_002549708 |
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| Protein GI | 222148751 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase
[COG2608] Copper chaperone |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.168329 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCCA GCAACACCCT TGAAACCACC ATCGCTATCG ATGGCATGAA TTGCGCTTCT
TGCGTGCGGC GGGTCGAAAA GGCGATTGTC GCCGTGCCGG GCGTATCGTC TGCCTCGGTC
AATCTGGCCA GTGAAAAGGC AAGTGTGCAA TTTTCCCAGC AGCCGGATCT CGCCGCCGTG
CTGGCAGCCA TTCAACAGGC CGGTTATGCG CCGCGTATCG AGACCCAGGA ATTGGACATA
GACGGCATGA ACTGCGCCTC CTGTGTGCGG CGCGTGGAAA AAGCCTTGGC CGCCGTGCCA
GGCGTCAGTT TAGCTGCGGT CAATCTGGCA ACCGAACGCG CTACCGTGAC TGTCACCGCA
GACACGGATA GACAGACCCT CGTGGCTGCC GTTGAACAGG CCGGTTATCA CATTCGCAAA
CCCGCCAATC CGGAAGCGCC GTCCGACCCC CTGCCCGATC AGCGCGCTGA TGAGACGCAT
CGCTTGACGC GGATGACTGT GATTGCCTTT CTCCTGACTC TTCCGGTTTT CATCATCGAA
ATGGGGTCGC ACCTCATTCC TGCCCTGCAT GTCTGGGTGA TGAACACGCT TGGCATGCAG
ACCAGCTGGG TGCTTCAGGC CCTGCTGGCC GGGCTAGTGC TGTTTGGTCC TGGCCTCACA
TTCTTTCGCC GTGGCGTGCC GAACCTGATA GGCCTTCATC CAGATATGAA CTCGCTGGTG
GTGCTGGGCG CATCCGCCGC CTATGGCTAT TCGCTGGTCG CCACGTTCAT GCCGGGGCTG
ATGCCGCAAG GCACCGTCAA TGTCTATTAT GAGGCGGCAG CCGTTATCGT CACGCTGGTG
CTGCTGGGCC GAACGCTGGA AAGTCGTGCC AAAGGCCGGA CCAGCGACGC CATTAAACGG
CTGATCGGCC TTAGCCCCAA AACCGCGCGG GTGATCCGGG AGGGCAAGCC TGTTGATCTC
GACATTGCCG CCGTTATCGT CGGTGACATC TTGGACATCC GTCCCGGCGA AAGACTTCCT
GTCGATGGCG TGGTGATCGA AGGCCGCTCC TTTATCGACG AATCGATGAT CTCAGGCGAG
CCGGTTCCGG TGGAAAAGGC AGACGGCGAC GTAGTAACCG GCGGTACAAT TAACAAAAAC
GGCGCCTTCC GGTTTCGCGC CACCAAGGTC GGGGCTGACA CGCTGCTCTC CCAGATCATC
CGCATGGTGG AAACCGCGCA AGGCTCGAAA CTCCCGATTC AAGGGATGGT GGACCGGATA
ACCGGCTGGT TCGTTCCAGC CGTGATCGCG GCGGCTCTGC TCACCTTCAT TGTCTGGCTG
TTGTTTGGCC CCACGCCTGC ACTCAGCTAT GCGCTGGTCA ATGCGGTTGC TGTGCTGATC
ATCGCCTGCC CCTGCGCCAT GGGGCTGGCC ACACCGACCT CGATCATGGT TGGCACCGGC
CGTGCCGCCG AGTTGGGCGT GCTGTTTCGC AAGGGCGAAG CCTTGCAAAG CCTGCGTGAT
GTCACGGTCG TGGCTCTCGA CAAGACCGGC ACGCTAACCG AAGGCAGGCC GGAACTGACC
GATCTGATGG CGGCAGACGG CTTTTCCCGC GCCGATATTC TGTCCTTCGC AGCCAGCCTA
GAGGCGCGCT CAGAACACCC GATTGCCAAA GCCATCCTGG CCGCTTCCGA GGCTGAACAA
GCGCCTCGCC AGATCGCAAC CGATGTTGTT GCAGAGCCAG GCTACGGTAT CAGCGGTATC
GTCTCCGGCC ATCAGGTGCT TGTTGGTGCC GACCGGGCGC TGACCCGGCA TGGCATTGAT
CTCTCGCCAT TTGCCGAGGA CGCCGAACAA CTCGGTTTGG ACGCAAAAAC CCCGCTCTAT
CTGGCAATTG ATGGCAAACC CGTGGCTCTG ATGGCCGTCG CCGACCCGAT CAAGGCAACC
ACACCGGCGG CAATCCGCGC CTTGCATGAC CTTGGCCTCA AGGTGGCGAT GATCAGCGGT
GATAACCGCC GCACTGCGGA GGCTATCGCC GCCCGCCTCG GCATCGACAC GGTGATTGCC
GAAGTCCTGC CCGACGGTAA GGTTGCGGCA ATTGCCGGTC TTCGCAAGGA TGGAAGCAAG
CTTGCCTTCG TTGGCGATGG CATCAACGAT GCCCCGGCCC TGTCCGCCGC TGATATCGGC
ATCGCAGTTG GCACCGGCTC CGATATCGCC ATCGAAAGCG CCGATGTCGT GCTGATGTCC
GGCGACCTGC AAGGCGTGGC GCGGGCGATC TCCATCAGCA AGGCGGTGAT CCGCAATATC
GGCCAGAACC TGTTCTGGGC CTTTGCCTAC AATGTCCTGC TGATCCCGCT GGCGGCTGGT
CTGCTCTACC CCGTCAATGG AACATTGCTA TCGCCGATCT TCGCCGCCGG TGCGATGGGA
CTGTCCAGTG TCTTTGTGCT GACCAACGCG CTCAGGCTGC GCAAGTTACG CCCGGCGTGA
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| Protein sequence | MNASNTLETT IAIDGMNCAS CVRRVEKAIV AVPGVSSASV NLASEKASVQ FSQQPDLAAV
LAAIQQAGYA PRIETQELDI DGMNCASCVR RVEKALAAVP GVSLAAVNLA TERATVTVTA
DTDRQTLVAA VEQAGYHIRK PANPEAPSDP LPDQRADETH RLTRMTVIAF LLTLPVFIIE
MGSHLIPALH VWVMNTLGMQ TSWVLQALLA GLVLFGPGLT FFRRGVPNLI GLHPDMNSLV
VLGASAAYGY SLVATFMPGL MPQGTVNVYY EAAAVIVTLV LLGRTLESRA KGRTSDAIKR
LIGLSPKTAR VIREGKPVDL DIAAVIVGDI LDIRPGERLP VDGVVIEGRS FIDESMISGE
PVPVEKADGD VVTGGTINKN GAFRFRATKV GADTLLSQII RMVETAQGSK LPIQGMVDRI
TGWFVPAVIA AALLTFIVWL LFGPTPALSY ALVNAVAVLI IACPCAMGLA TPTSIMVGTG
RAAELGVLFR KGEALQSLRD VTVVALDKTG TLTEGRPELT DLMAADGFSR ADILSFAASL
EARSEHPIAK AILAASEAEQ APRQIATDVV AEPGYGISGI VSGHQVLVGA DRALTRHGID
LSPFAEDAEQ LGLDAKTPLY LAIDGKPVAL MAVADPIKAT TPAAIRALHD LGLKVAMISG
DNRRTAEAIA ARLGIDTVIA EVLPDGKVAA IAGLRKDGSK LAFVGDGIND APALSAADIG
IAVGTGSDIA IESADVVLMS GDLQGVARAI SISKAVIRNI GQNLFWAFAY NVLLIPLAAG
LLYPVNGTLL SPIFAAGAMG LSSVFVLTNA LRLRKLRPA
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