| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2366 |
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| Symbol | mfd |
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| ID | 7386010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1934252 |
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| End bp | 1937779 |
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| Gene Length | 3528 bp |
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| Protein Length | 1175 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643651503 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002549692 |
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| Protein GI | 222148735 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTCCC TGTTTGATGC AAAGAAGACG GCAGCGGCGG CGTCCGCTGT TACCCTCTCG
CCTGTGCCTG ATGGTATGGA CGCTTTTCTG GTGGCGGAAC TGGCGCGGCA GGGCAGGCCT
GTCGCCTATC TTCTATCGGA TTCCAGCCGG ATGAATGATA TCGAGCAGAT GCTCGGCTTC
TGTGCGCCGG AAATTCCGGT GCTGACCCTG CCTGCCTGGG ATTGCCTGCC CTATGACCGG
GTTTCGCCCA GCGCCGATAT TTCCGCCCGC AGGCTTTCGG CACTGTCGGG GCTGATTGCC
CATGCCCGAA AGCCACATCC GGGCATTGTT CTTGTCACTG CCAATGCCAT GCTGCAAAAG
CTGGCACCGG CTGATGTTAT CGAAAGCCTG TCCTTTTCGG CCCGCCCCGG CAATCAGGTG
AAGATGGACG ACGTTGCCGC CCGCTTGTCG CGCAACGGCT TTGAACGCGT CGATACCGTG
CGCGAAGTCG GCGAATTTGC GGTGCGTGGC GGTATTCTTG ACGTGTTCGT GCCGGGCTCT
GAGGAGCCGG TGCGGCTGGA TTTCTTTGGT GATACGCTGG AAAGTATCCG CAGTTTCGAT
CCAGCCAGCC AGCGCACTAT CGGTCAGGTC CGCTCACTGG ACCTCAACCC GATGAGCGAA
GTGACGTTGA CGCCGGAAAG CATCAGCCGG TTTCGCAAGA ATTACCTGTC GCTGTTTGGC
GCGGCCACCC GCGACGATGC GCTGTACACC GCCGTGTCCG AAGGCCGCCG TTATGCGGGC
ATGGAACACT GGATGCCGCT GTTTCATGAA AAGCTGGAGA CGGTGTTCGA TTATCTCACC
GATTTCCGGG TGGTGCTCGA CCATACGGTG CGCGAATCCG CCGAAGAACG CGGCAAGCTG
ATCCGCGACT ATTATGAGGC GCGTTTGAAC AGCGCGACAC CCGGCAAGGG CCATCTGGCG
CAGGGCACGC CTTATAAACC GATACCGCCG GAATATCTCT ATTTAGGGGC GGCGGAATTT
GCCAAGAAGC TAGAAGCGCT GAACCCGATC CGTCTGACAC CGTTTGCCGA GCCGGATAGC
GAAGGCCGCA AGATTGTCGA ACTCTCGGCT CGTTCCGGCC CGCGCTGGGC GAAGCTGGCC
GCGCAGGAAA GCAGCGAGAC CAAGGCTGAT GGCGAGGCGC AACGGGTCAA TGTCTTTACC
CAGGCAGTAA AATATATTTC CGACAAGCGG GCTTCCGGCT CCAAGGTGCT GATTACCGGC
TGGTCGGAAG GTTCGCTCGA CCGGCTGTTG CAGGTGTTGA ACGAGCACGG GCTGGAGCGG
CTAAAGCCTG TTACTGCCCT GAAGGATCTC GATCAGCTTG GCAAGGGTCA TGCGGCAACC
GCCGTCCTGG CGCTTGAGGG CGGGTTCGAG GCGGGCGAAC TCGTGGTGGT CGGCGAGCAG
GATATCCTCG GCGACCGCAT GGTGCGCCGG TCCAAGCGTC GCAAGCGGGC AGCCGATTTT
ATTTCGGAAG TGGCCGGGCT GGATGAAGGC TCGATCGTTG TTCATGCAGA GCATGGCATT
GGCCGGTTTA TCGGATTGCG CACCATCCAG GCGGCGGGCA GCCAGCATGC CTGTCTGGAA
TTGCAATATG CCGACGAGGC AAAGCTGTTC CTGCCGGTCG AAAATATCGA GCTTCTGTCG
CGCTACGGCT CGGAAGGCAG CGAAGCGCAA TTGGACAAGT TGGGCGGCGG TGCCTGGCAG
ATGCGCAAGG CCAAGCTGAA GAAACGCCTG CTGGACATGG CCGGTGGGCT GATCCGCATC
GCCGCCGAGC GGATGATGCG GTCGGCACCG GTGCTGGCCA CGACTGAAGG CTTTTACGAC
GAATTCGCCG CGCGGTTCCC CTATGAGGAG ACCGAGGACC AGATGAATGC CATCGAGGCG
GTGCGCGGCG ATCTGGCTGC TGGACGTCCA ATGGACCGCC TGATCTGCGG CGATGTCGGC
TTCGGCAAGA CGGAGGTGGC GCTGCGCGCC GCCTTCGTGG CAGCGATGAA CGGTATTCAG
GTGGCGGTCG TGGTTCCGAC CACGCTTTTG GCGCGCCAGC ATTTCAAGAC GTTTTCCGAG
CGGTTTCGCG GGTTGCCAAT CCGCATCCAG CAGGCCTCGC GGCTGGTGGG TACCAAGGAG
CTGAACCTCG TCAAGAAGGA AGTGGCTGAG GGCAAGACCG ATATTGTCGT CGGCACCCAT
GCTCTCCTGG GGTCGGGCAT AAAATTCGCC AATCTTGGCC TGCTGGTGAT TGATGAAGAG
CAGCATTTCG GCGTCAAGCA CAAGGAACGG CTGAAAGAGT TGAAGAGCGA CGTGCATGTG
CTGACGCTGT CGGCGACGCC CATTCCGCGC ACCTTGCAGC TGGCGATGAC CGGGGTGCGC
GAATTGTCGC TGATCACCAC GCCGCCAGTG GACCGTATGG CGGTGCGCAC CTTCATTTCG
CCCTTCGATC CGCTGGTGAT CCGCGAAACG CTGATGCGTG AACATTATCG CGGTGGGCAG
AGCTTTTATG TCTGCCCACG TCTGGCGGAT CTTGCCGATA TCAAGGCATT TCTGGAGTCG
GATGTGCCGG AATTGAAAGT GGCGATTGCC CATGGCCAGA TGGCGGCGGG CGAACTGGAA
GACATCATGA ACGCCTTCTA TGAAGGCCGC TATGATGTTC TGCTTTCCAC CACCATCGTT
GAATCCGGTC TTGATGTGCC GACCGCAAAC ACTCTCATTG TCCATCGCGC CGACATGTTC
GGCCTAGCCC AGCTCTACCA GATCCGCGGC CGGGTTGGTC GCTCCAAGGT GCGAGCCTTC
GCGCTGCTGA CCTTGCCGGT CAACAAGGTT CTGACGACCA GCGCCGAGCG GCGGCTGAAA
GTGCTGCAAT CGCTGGATAC GCTGGGCGCG GGCTTCCAGC TTGCCAGCCA CGATCTCGAT
ATTCGCGGTG CTGGCAATTT GCTGGGCGAG GAACAATCCG GCCACATCAA GGAAGTCGGC
TTCGAGCTTT ACCAGCAAAT GCTGGAGGAG GCCGTGGCCG AGGTGAAGGG CGAGGACGAG
GTCGTCGATA GCGGCTGGTC GCCGCAAATC CAGGTCGGCA CATCTGTGAT GATCCCCGAC
GAATACGTGC CAGACCTGCA TCTGCGTCTT GGCCTGTATC GCCGCCTGGG CGAATTGACC
GAGTTGAACG ATATTGACGG CTTCGGTGCC GAGTTGATCG ACCGGTTCGG GCCGCTGCCA
GCGGAAGTGC AGAACCTGTT GAAGGTCGTT TACGTCAAGG CGCTGTGCCG CAAGGCCAAT
GTCGAAAAGC TGGAAGCCGG TCCGAAGGGC GTCGTGGTTC AGTTCCGCAA CAAGCTGTTC
CCCAACCCGG CAGCTTTGGT CGGCTTCATC GCCAAACAGG GCAGCATGGC CAAGATCCGT
CCAGACCACA GTGTGTTCCT GACCCGCGAT CTGCCAACGC CCGAGAAACG GCTGGCGGGT
GCGGCGACCA TCATGGCGCA ACTGGCGGAA CTGGCCAAGG TGAAGTGA
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| Protein sequence | MISLFDAKKT AAAASAVTLS PVPDGMDAFL VAELARQGRP VAYLLSDSSR MNDIEQMLGF
CAPEIPVLTL PAWDCLPYDR VSPSADISAR RLSALSGLIA HARKPHPGIV LVTANAMLQK
LAPADVIESL SFSARPGNQV KMDDVAARLS RNGFERVDTV REVGEFAVRG GILDVFVPGS
EEPVRLDFFG DTLESIRSFD PASQRTIGQV RSLDLNPMSE VTLTPESISR FRKNYLSLFG
AATRDDALYT AVSEGRRYAG MEHWMPLFHE KLETVFDYLT DFRVVLDHTV RESAEERGKL
IRDYYEARLN SATPGKGHLA QGTPYKPIPP EYLYLGAAEF AKKLEALNPI RLTPFAEPDS
EGRKIVELSA RSGPRWAKLA AQESSETKAD GEAQRVNVFT QAVKYISDKR ASGSKVLITG
WSEGSLDRLL QVLNEHGLER LKPVTALKDL DQLGKGHAAT AVLALEGGFE AGELVVVGEQ
DILGDRMVRR SKRRKRAADF ISEVAGLDEG SIVVHAEHGI GRFIGLRTIQ AAGSQHACLE
LQYADEAKLF LPVENIELLS RYGSEGSEAQ LDKLGGGAWQ MRKAKLKKRL LDMAGGLIRI
AAERMMRSAP VLATTEGFYD EFAARFPYEE TEDQMNAIEA VRGDLAAGRP MDRLICGDVG
FGKTEVALRA AFVAAMNGIQ VAVVVPTTLL ARQHFKTFSE RFRGLPIRIQ QASRLVGTKE
LNLVKKEVAE GKTDIVVGTH ALLGSGIKFA NLGLLVIDEE QHFGVKHKER LKELKSDVHV
LTLSATPIPR TLQLAMTGVR ELSLITTPPV DRMAVRTFIS PFDPLVIRET LMREHYRGGQ
SFYVCPRLAD LADIKAFLES DVPELKVAIA HGQMAAGELE DIMNAFYEGR YDVLLSTTIV
ESGLDVPTAN TLIVHRADMF GLAQLYQIRG RVGRSKVRAF ALLTLPVNKV LTTSAERRLK
VLQSLDTLGA GFQLASHDLD IRGAGNLLGE EQSGHIKEVG FELYQQMLEE AVAEVKGEDE
VVDSGWSPQI QVGTSVMIPD EYVPDLHLRL GLYRRLGELT ELNDIDGFGA ELIDRFGPLP
AEVQNLLKVV YVKALCRKAN VEKLEAGPKG VVVQFRNKLF PNPAALVGFI AKQGSMAKIR
PDHSVFLTRD LPTPEKRLAG AATIMAQLAE LAKVK
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