| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2261 |
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| Symbol | rluC |
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| ID | 7386353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1856814 |
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| End bp | 1857806 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643651430 |
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| Product | ribosomal large subunit pseudouridine synthase C |
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| Protein accession | YP_002549624 |
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| Protein GI | 222148667 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGGCA TAGAACATAT TACCGTCGGT CCAGACGAGG CGGGCATGCG CCTCGACCGC
TGGTTCAAGA TCCATTATCC GGGCCTCGGC TTCGGCCCCT TGCAAAAGCT GATGCGTTCC
GGCCAGGTCC GTGTCGATGG CGGCCGGGTG AAAACCGACG CCCGCGTGCA GCCCGGACAG
GTCGTGCGTG TGCCGCCGAT GGATGTCGAT GCCAAGACGC CGAAATCCGG GCCAATTGCC
TCCCATGATC TGAAGCACGC CGGCGATGGC GAATTGCTGG CGCGCATGTT GCTGCATGAG
GATGAAAAAG TCTTTGTGCT GAACAAGCCT GCCGGTCTGG CCGTGCAGGG CGGCTCCGGC
CTCAATCGCC ATATCGACCA GATGCTCGAA GCATGGACCA GCAAGAAGGG CGAAAAGCCG
CGTCTCGTGC ATCGCCTCGA CCGGGATACG TCGGGTGTGC TCGTGGTGGC CCGCACCCGT
GGTGCCGCGC AGAAACTGAC GGCAGCGTTT CGTGAGCGTG ATACCAAGAA GACCTATTGG
GCGCTGGTCA AGGGCGTGCC GCGCAAGCAT GACGACAAGA TCTCCACCTG GGTGGTCAAG
GAACAGACCG AAGACGGCGA CCGCATGCGC ATCGCCCGCC ACGGAGAAGA CGGTGCCGAT
CACGCGGTTT CCTATTACCG TGTGCTTGAA ACCGCAGCGC AAAGCCTCGC CTGGCTGGAA
ATGGAGCCCT ATACGGGCCG TACCCATCAG CTGCGCCTCC ACGCCCTGCA TATCGGCCAT
CCGATCATCG GTGATCCAAA ATATTATATC GACGATCCCA ACTGGGATTT CCCAGGCGGC
GTCCAGAAGC GGCTGCATCT ACATGCCCGC CATATCGATA TTCCCCATCC CGATGGCGGC
CGCCTGCGCA TCACCGCGCC TTTGCCGCCG CATATGGTGC AGACCTGGAA CCTTCTGGGC
CTGGACATGG AAAATGGCGG TGACTTTGCA TGA
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| Protein sequence | MAGIEHITVG PDEAGMRLDR WFKIHYPGLG FGPLQKLMRS GQVRVDGGRV KTDARVQPGQ
VVRVPPMDVD AKTPKSGPIA SHDLKHAGDG ELLARMLLHE DEKVFVLNKP AGLAVQGGSG
LNRHIDQMLE AWTSKKGEKP RLVHRLDRDT SGVLVVARTR GAAQKLTAAF RERDTKKTYW
ALVKGVPRKH DDKISTWVVK EQTEDGDRMR IARHGEDGAD HAVSYYRVLE TAAQSLAWLE
MEPYTGRTHQ LRLHALHIGH PIIGDPKYYI DDPNWDFPGG VQKRLHLHAR HIDIPHPDGG
RLRITAPLPP HMVQTWNLLG LDMENGGDFA
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