| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2183 |
|---|
| Symbol | |
|---|
| ID | 7387895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1796597 |
|---|
| End bp | 1797811 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643651376 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002549570 |
|---|
| Protein GI | 222148613 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0523] Putative GTPases (G3E family) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.233817 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAACA AGCTTCCCGT GACTGTGCTG TCCGGCTTTC TCGGTGCCGG TAAAACCACG
GTTCTCAATC ATATTCTTGG CAACCGGGCC GGGCTGAAGG TCGCGGTGAT CGTCAATGAC
ATGAGCGAGG TGAATATCGA TGCCGCCCTG GTGCGTGATG GCGGTGCCAA TCTCTCGCGA
ACCGACGAGC AATTGGTGGA AATGAGCAAT GGCTGCATCT GCTGCACCCT GCGCGAAGAC
CTGCTTACGG AAGTGCGGCA ACTGGCGGCT TCAGGCCGGT TCGATTATCT GCTGATCGAA
GCGACCGGCA TTGCCGAACC GCTGCCGATT GCCAGCACGT TTGAGTTTCG TGACGAAGAC
GGCAACAGCC TCTCCGACAT CGCGCGGCTG GATACGATGG TCACGGTGGT CGATGCAGCC
AACTTATTGC GTGATTACAG CTCCAGCGAC TTCCTCTCCG ACCGGGGCGA AACGGCGGGC
GAAGACGATA ACCGCACGCT CGTTGACCTT CTGGTCGAAC AGATCGAGTT TGCCGACGTG
GTCGTCCTCA ACAAGGCCGA AACCGCAGGC CCTGCCCGGC TGGATGCGGC CCGCAAGATC
ATCGTCGGCC TCAACCCGGA TGCGCGGATC ATTGAGGCCG ATTTCGGCCA GATTGAACCG
AAGGATGTGC TGGGAACCGG GCGGTTCGAC CTTGGCCGGG CGGAAACCCA TCCACTGTGG
TTCAAGGAAT TGCACGGTTT CAAGGACCAT GTGCCTGAAA CCGAAGAATA TGGCATTCGC
AGCTTTGTCT ATCGCGCCCG CCGTCCACTC GATCCTCAGA GGTTTCAGGA CTTTATCGAC
AGCGACTGGC CGGGCGTGAT CCGCGCCAAG GGCTTTTTCT GGCTGGCCAC CCGGCCCCAT
CATGTCGGAG AACTGAGCCA GGCCGGACCG CTGGTGCGCA CCGGGCGCAT GGGCCTATGG
TGGGCCTCCG TACCCAAACA GCAATGGCCG CAGGACAAGG GCTTTCTCAA GGCCATGCAA
CCCTATCTCG ACCCGGTCTG GGGTGATCGA CGCCAGGAAC TCGTATTTAT CGGCGCAGAT
CCCATGGATG AAGCCGAAAT CCGCGCCCGC CTGGACGCCT GTCTGGTGCC CGCTGACCGA
TTCACGCCCG GTGCTTGGCG CGATATGCGC GACCCGTTCC CCAACTGGGC AGCGCCGCAA
TTTGCCGAGG CTTGA
|
|---|
| Protein sequence | MDNKLPVTVL SGFLGAGKTT VLNHILGNRA GLKVAVIVND MSEVNIDAAL VRDGGANLSR
TDEQLVEMSN GCICCTLRED LLTEVRQLAA SGRFDYLLIE ATGIAEPLPI ASTFEFRDED
GNSLSDIARL DTMVTVVDAA NLLRDYSSSD FLSDRGETAG EDDNRTLVDL LVEQIEFADV
VVLNKAETAG PARLDAARKI IVGLNPDARI IEADFGQIEP KDVLGTGRFD LGRAETHPLW
FKELHGFKDH VPETEEYGIR SFVYRARRPL DPQRFQDFID SDWPGVIRAK GFFWLATRPH
HVGELSQAGP LVRTGRMGLW WASVPKQQWP QDKGFLKAMQ PYLDPVWGDR RQELVFIGAD
PMDEAEIRAR LDACLVPADR FTPGAWRDMR DPFPNWAAPQ FAEA
|
|---|
| |