| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2080 |
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| Symbol | gph |
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| ID | 7386888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1707442 |
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| End bp | 1708155 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643651297 |
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| Product | phosphoglycolate phosphatase |
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| Protein accession | YP_002549492 |
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| Protein GI | 222148535 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.307061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAAAGTC AGCCCGTGTC CCCAGCAATC AACGCCGCCC CCGCCACTAT TGTCTTCGAT
CTGGATGGAA CCCTGATCGA TACGGCCGAG GACCTCGTGG CAAGCCTCAA CTATACCATC
GCCGCTGCCG ATCTGGCGCC AATGGTGGCC GAGGACCTCA GCCATCTGGT CGGACACGGT
GCGCGGGTGA TGATCGAGCG GGCCTTCAGC CTGCGCGGCA GGCCGATTTC CGAGGATGCG
TTCCAGCCCC TGCTTGAACG GTTCATCGAC CATTACAAAG ACCATATGCC CGGCAGAAGC
CAGCCCTATC CCGGCCTGCT GAACGCCCTG GAACGGCTCG ACAAGGCAGG GCACCGACTG
GCGGTCTGCA CCAACAAGAT GGAGGGCCTT GCCCGGCCAT TGCTTGAGGG CTTGAGCCTG
ACGGACCGGT TCGCCGCCAT TACCGGCGGT GATACATTCG AGATGCGCAA GCCCGATGCC
GGTCATCTGC TCGGCACCAT CGCCAAGGCT GGCGGCGACC CGCGCCGGGC TATCATGGTC
GGCGATAGCC GCAACGACAT TCTGGTGGCG CGCAATGCCG GTATCCCATC CATTGCCGTG
CCTTTCGGCT ACTCGGACGT ACCGGTCGCT GACCTCGAAC CCGATGTGAT CATTACACAT
TTCAATGAAT TGACCTTGGA TCTGGTCGAC AGGCTCCTCA ACGAGGCCAA CTGA
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| Protein sequence | MESQPVSPAI NAAPATIVFD LDGTLIDTAE DLVASLNYTI AAADLAPMVA EDLSHLVGHG
ARVMIERAFS LRGRPISEDA FQPLLERFID HYKDHMPGRS QPYPGLLNAL ERLDKAGHRL
AVCTNKMEGL ARPLLEGLSL TDRFAAITGG DTFEMRKPDA GHLLGTIAKA GGDPRRAIMV
GDSRNDILVA RNAGIPSIAV PFGYSDVPVA DLEPDVIITH FNELTLDLVD RLLNEAN
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