Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2028 |
Symbol | hemN |
ID | 7386849 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1665809 |
End bp | 1667161 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643651257 |
Product | coproporphyrinogen III oxidase |
Protein accession | YP_002549453 |
Protein GI | 222148496 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAGCCA AAGCGCTTCT CTCAAAATAT GCCGCCGCCG TTCCGCGCTA CACGAGTTAT CCGACGGCGC CGCATTTTCA TACCGGTGTT GACTGTGGCA ATTATGCGCA GTGGTTATCG CTGTTGGGGC AGGGGCAGAC GATCTCTCTT TATATTCATA TCCCCTACTG CGACAGGCTT TGCTGGTTTT GCGCCTGCCA TACCAAACAT ACACTAAAGT ATGAGCCGAT AACCGCTTAT CTTACTGCGC TTTTCAGAGA GGTCGAAAAT ACCGCCAGGT TCGTCGGTCG CGAAGCAGTG GTGACTGCTG TGCATCTTGG CGGTGGCTCT CCCACCATGC TGCGCCCGCA GGACATGGTG GCGCTGATTG ACCGGCTTCG GGCAAATTTT ACATTTGCCG ATGATGCGGA AATCAGCGTG GAGATGGACC CGAACGATCT CGACGAAGCT CGATATGATG CGCTTGCATC CATTGGTTTG ACGCGGGCAA GCCTAGGTGT TCAGGATTTC GACCCGGTGG TTCAGAAGGC GATCAACCGT CTCCAAACCT TCGAACAGAC TAAATCAGTG GTTGAACAGG TGCGTCTGCG CGGCGCCACC TCGGTCAATT GCGATATTCT CTATGGTCTT CCTTATCAGA CCCTCGAAAG TCTGGAGAAA ACTGTCCTCG ATATCGTATC GTTGAAGCCG GATCGGATTG CGTTATTCGG CTATGCTCAT GTCCCCTGGA TGAAAAAGCA TCAAACGCTG ATTCCCGAGA GCGCCTTGCC TGATATCGTC ATGCGCTATG AACAGATGGT GCGGGCCTCT GCCATGCTGG TGGAGGCTGG CTATGATGCC ATTGGCATCG ACCATTTTGC ATTGCCCGAG GATAGTCTGG CTGTCGCGGC ACGGCAGAAA CGGCTGCGGC GTAATTTTCA GGGTTATACG ACTGACGGCG CCGATGCGTT GATTGGACTT GGCGCCTCTT CGATCAGCCA ACTGCCGCAA GGCTATGTAC AGAACATGCC CGCGACTGGA GAATATCAGC GTCTTGTCAG CGAAAACGGG CTTGCCGCGA CACGAGGCAT TGCTCTGAGC GGCGATGACC GAGTGCGTGC CGCTGTCATC GAGCAGATCA TGTGCGAGTT CGGCTTTTCC TTTGCCGATA TCCGTCAGGC TTTTCCTGAT GTCGCCGAGG ATGTGATCGC AGAAGCCAAG ATATTCACGG CTTCCAACGG TGACGATCTC TGCCGGATCG ACCGGGAGTG TTTTACTCTG ACTCCCACCG GGCGGCTCTT TGCCCGCAGC ATTGCGGCCA CGTTCGATTG CTACTTTTCC AGCGGTAAGG CCCGTCATTC CATTGCTGTT TGA
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Protein sequence | MPAKALLSKY AAAVPRYTSY PTAPHFHTGV DCGNYAQWLS LLGQGQTISL YIHIPYCDRL CWFCACHTKH TLKYEPITAY LTALFREVEN TARFVGREAV VTAVHLGGGS PTMLRPQDMV ALIDRLRANF TFADDAEISV EMDPNDLDEA RYDALASIGL TRASLGVQDF DPVVQKAINR LQTFEQTKSV VEQVRLRGAT SVNCDILYGL PYQTLESLEK TVLDIVSLKP DRIALFGYAH VPWMKKHQTL IPESALPDIV MRYEQMVRAS AMLVEAGYDA IGIDHFALPE DSLAVAARQK RLRRNFQGYT TDGADALIGL GASSISQLPQ GYVQNMPATG EYQRLVSENG LAATRGIALS GDDRVRAAVI EQIMCEFGFS FADIRQAFPD VAEDVIAEAK IFTASNGDDL CRIDRECFTL TPTGRLFARS IAATFDCYFS SGKARHSIAV
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